Variant report
Variant | rs61606062 |
---|---|
Chromosome Location | chr15:78140276-78140277 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:78133236..78134995-chr15:78137476..78140280,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1123552 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11631822 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11637937 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12910504 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs34549121 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34709918 | 0.88[ASN][1000 genomes] |
rs35020526 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs35575866 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3936093 | 0.88[ASN][1000 genomes] |
rs4255755 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4486846 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4587942 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4886526 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4886527 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4886531 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4886918 | 0.88[ASN][1000 genomes] |
rs4886930 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4886932 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4886939 | 0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs6495252 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6495253 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6495254 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7164558 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7169661 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7176895 | 0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7179211 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7182697 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7183989 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs8026203 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs8032021 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8036045 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1806097 | chr15:77817889-78301377 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
2 | nsv529491 | chr15:77932659-78751516 | Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 80 gene(s) | inside rSNPs | diseases |
3 | nsv833062 | chr15:78035206-78220358 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv904424 | chr15:78059488-78158893 | Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv904425 | chr15:78064664-78153850 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv1833316 | chr15:78081307-78328108 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
7 | nsv904426 | chr15:78090630-78264164 | Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
8 | nsv904427 | chr15:78129964-78251431 | Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:78138400-78143600 | Weak transcription | Fetal Intestine Large | intestine |
2 | chr15:78138600-78140400 | Enhancers | Fetal Brain Male | brain |