Variant report

Variant	rs7169661
Chromosome Location	chr15:78146659-78146660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78145789..78149716-chr15:78150304..78153392,4	K562	blood:
2	chr15:78145789..78147609-chr15:78150785..78152558,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11072674	0.86[JPT][hapmap]
rs1123552	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11629621	0.86[JPT][hapmap]
rs11631822	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11637937	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12910504	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34549121	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34709918	0.84[ASN][1000 genomes]
rs35020526	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35575866	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3936093	0.85[ASN][1000 genomes]
rs4255755	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4486846	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4587942	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4886526	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886527	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886531	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886918	0.84[ASN][1000 genomes]
rs4886930	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886932	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886939	0.94[ASN][1000 genomes]
rs61606062	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495252	0.82[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495253	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495254	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7164558	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7176895	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7179211	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7182697	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7183989	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8026203	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8032021	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036045	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904424	chr15:78059488-78158893	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904425	chr15:78064664-78153850	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7169661	PARP6	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78140400-78149000	Weak transcription	Fetal Brain Male	brain
2	chr15:78144400-78149000	Weak transcription	Fetal Brain Female	brain
3	chr15:78145000-78149400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:78145400-78147400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:78145400-78149000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:78145400-78151600	Weak transcription	Fetal Intestine Large	intestine
7	chr15:78145800-78151600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:78146000-78149200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:78146000-78149400	Weak transcription	Fetal Intestine Small	intestine
10	chr15:78146400-78151200	Weak transcription	Colonic Mucosa	Colon

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