Variant report

Variant	rs34596646
Chromosome Location	chr12:47727364-47727365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11183859	0.84[AMR][1000 genomes]
rs11183860	0.84[AMR][1000 genomes]
rs11183862	0.84[AMR][1000 genomes]
rs11183863	0.84[AMR][1000 genomes]
rs11183866	0.84[AMR][1000 genomes]
rs11183869	0.84[AMR][1000 genomes]
rs11183870	0.80[AMR][1000 genomes]
rs11183871	0.84[AMR][1000 genomes]
rs11183875	0.80[AMR][1000 genomes]
rs11561402	0.84[AMR][1000 genomes]
rs12809861	0.84[AMR][1000 genomes]
rs12810168	0.84[AMR][1000 genomes]
rs12814166	0.84[AMR][1000 genomes]
rs2079026	0.83[AMR][1000 genomes]
rs2079028	0.83[AMR][1000 genomes]
rs34762197	0.84[AMR][1000 genomes]
rs34878892	0.84[AMR][1000 genomes]
rs35743720	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs35889007	0.83[AMR][1000 genomes]
rs4768145	0.84[AMR][1000 genomes]
rs4768146	0.80[AMR][1000 genomes]
rs4768147	0.84[AMR][1000 genomes]
rs4768796	0.80[AMR][1000 genomes]
rs4768797	0.80[AMR][1000 genomes]
rs4768798	0.84[AMR][1000 genomes]
rs4768799	0.80[AMR][1000 genomes]
rs4768800	0.84[AMR][1000 genomes]
rs71445736	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47723400-47728600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:47727000-47727600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:47727200-47727600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links