Variant report

Variant	rs4768796
Chromosome Location	chr12:47730372-47730373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10492012	0.86[AMR][1000 genomes]
rs11183852	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11183859	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183860	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183862	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183863	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183866	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11183867	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183869	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11183870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183871	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11183872	0.80[AMR][1000 genomes]
rs11183874	0.86[AMR][1000 genomes]
rs11183875	0.81[AMR][1000 genomes]
rs11183877	0.86[AMR][1000 genomes]
rs11183878	0.86[AMR][1000 genomes]
rs11183879	0.86[AMR][1000 genomes]
rs11183880	0.86[AMR][1000 genomes]
rs11183881	0.86[AMR][1000 genomes]
rs11183882	0.86[AMR][1000 genomes]
rs11183883	0.86[AMR][1000 genomes]
rs11183884	0.86[AMR][1000 genomes]
rs11183885	0.86[AMR][1000 genomes]
rs11183886	0.86[AMR][1000 genomes]
rs11183890	0.86[AMR][1000 genomes]
rs11183891	0.86[AMR][1000 genomes]
rs11183892	0.86[AMR][1000 genomes]
rs11183893	0.86[AMR][1000 genomes]
rs11183894	0.86[AMR][1000 genomes]
rs11183895	0.86[AMR][1000 genomes]
rs11183896	0.86[AMR][1000 genomes]
rs11183897	0.86[AMR][1000 genomes]
rs11561402	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12809861	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12809955	0.86[AMR][1000 genomes]
rs12810168	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12814166	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12814452	0.86[AMR][1000 genomes]
rs12815928	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12817826	0.86[AMR][1000 genomes]
rs12818420	0.86[AMR][1000 genomes]
rs12827137	0.86[AMR][1000 genomes]
rs12830961	0.86[AMR][1000 genomes]
rs12832953	0.86[AMR][1000 genomes]
rs1421356	0.86[AMR][1000 genomes]
rs1833456	0.86[AMR][1000 genomes]
rs2040644	0.86[AMR][1000 genomes]
rs2040645	0.86[AMR][1000 genomes]
rs2040646	0.86[AMR][1000 genomes]
rs2040647	0.86[AMR][1000 genomes]
rs2079026	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2079027	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2079028	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34596646	0.80[AMR][1000 genomes]
rs34762197	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34878892	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35743720	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35889007	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4473016	0.86[AMR][1000 genomes]
rs4768145	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768146	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768147	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768797	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768798	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4768799	1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768800	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71445736	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71462955	0.83[ASN][1000 genomes]
rs71462958	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood

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