Variant report

Variant	rs34878892
Chromosome Location	chr12:47727595-47727596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47517093..47519935-chr12:47725318..47727826,2	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10492010	0.85[ASN][1000 genomes]
rs10492012	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183848	0.90[ASN][1000 genomes]
rs11183850	0.85[ASN][1000 genomes]
rs11183851	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11183853	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11183854	1.00[ASN][1000 genomes]
rs11183855	1.00[ASN][1000 genomes]
rs11183856	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11183857	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11183858	1.00[ASN][1000 genomes]
rs11183859	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183867	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11183869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183870	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11183871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183872	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183874	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183875	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183877	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183878	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183879	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183880	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183881	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183882	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183883	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183884	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183885	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183886	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183890	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183891	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11183892	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183893	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183894	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183895	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183896	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183897	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183898	0.95[ASN][1000 genomes]
rs11183900	0.95[ASN][1000 genomes]
rs11183901	0.95[ASN][1000 genomes]
rs11183913	0.95[ASN][1000 genomes]
rs11183916	0.85[ASN][1000 genomes]
rs11183917	0.85[ASN][1000 genomes]
rs11183926	0.85[ASN][1000 genomes]
rs11183928	0.85[ASN][1000 genomes]
rs11183930	0.85[ASN][1000 genomes]
rs11561402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12227067	0.85[ASN][1000 genomes]
rs12228428	0.90[ASN][1000 genomes]
rs12228708	0.85[ASN][1000 genomes]
rs12230585	0.90[ASN][1000 genomes]
rs12809861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809955	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12810168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12814452	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12815928	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12817826	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12818155	0.95[ASN][1000 genomes]
rs12818420	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12827137	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12830961	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12832278	0.95[ASN][1000 genomes]
rs12832953	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1421356	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1833456	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2040644	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2040645	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2040646	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2040647	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2079026	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079027	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2079028	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34187987	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34596646	0.84[AMR][1000 genomes]
rs34692456	0.95[ASN][1000 genomes]
rs34762197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521464	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35743720	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35839210	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35889007	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36059508	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4473016	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4768145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768146	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768153	0.85[ASN][1000 genomes]
rs4768796	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768797	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4768798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768799	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71445736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462954	0.90[ASN][1000 genomes]
rs71462956	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs71462957	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs71462959	0.95[ASN][1000 genomes]
rs71462960	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs71462961	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs855129	0.81[ASN][1000 genomes]
rs855131	0.81[ASN][1000 genomes]
rs855132	0.81[ASN][1000 genomes]
rs855133	0.81[ASN][1000 genomes]
rs855139	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47723400-47728600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:47727000-47727600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:47727200-47727600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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