Variant report

Variant	rs12230585
Chromosome Location	chr12:47722597-47722598
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47717481..47720198-chr12:47722159..47724714,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10492012	0.85[ASN][1000 genomes]
rs11183848	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183849	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11183850	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11183851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183852	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11183853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183858	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183859	0.90[ASN][1000 genomes]
rs11183860	0.90[ASN][1000 genomes]
rs11183862	0.90[ASN][1000 genomes]
rs11183863	0.90[ASN][1000 genomes]
rs11183866	0.90[ASN][1000 genomes]
rs11183869	0.82[ASN][1000 genomes]
rs11183871	0.90[ASN][1000 genomes]
rs11183872	0.85[ASN][1000 genomes]
rs11183874	0.85[ASN][1000 genomes]
rs11183875	0.85[ASN][1000 genomes]
rs11183877	0.85[ASN][1000 genomes]
rs11183878	0.85[ASN][1000 genomes]
rs11183879	0.85[ASN][1000 genomes]
rs11183880	0.85[ASN][1000 genomes]
rs11183881	0.85[ASN][1000 genomes]
rs11183882	0.85[ASN][1000 genomes]
rs11183883	0.85[ASN][1000 genomes]
rs11183884	0.85[ASN][1000 genomes]
rs11183885	0.85[ASN][1000 genomes]
rs11183886	0.85[ASN][1000 genomes]
rs11183890	0.85[ASN][1000 genomes]
rs11183892	0.85[ASN][1000 genomes]
rs11183893	0.85[ASN][1000 genomes]
rs11183894	0.85[ASN][1000 genomes]
rs11183895	0.85[ASN][1000 genomes]
rs11183896	0.85[ASN][1000 genomes]
rs11183897	0.85[ASN][1000 genomes]
rs11183898	0.85[ASN][1000 genomes]
rs11183900	0.85[ASN][1000 genomes]
rs11183901	0.85[ASN][1000 genomes]
rs11183913	0.85[ASN][1000 genomes]
rs11561402	0.90[ASN][1000 genomes]
rs12228428	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809861	0.90[ASN][1000 genomes]
rs12810168	0.90[ASN][1000 genomes]
rs12814166	0.85[ASN][1000 genomes]
rs12814452	0.85[ASN][1000 genomes]
rs12817826	0.85[ASN][1000 genomes]
rs12818155	0.85[ASN][1000 genomes]
rs12818420	0.85[ASN][1000 genomes]
rs12827137	0.85[ASN][1000 genomes]
rs12830961	0.85[ASN][1000 genomes]
rs12832278	0.85[ASN][1000 genomes]
rs12832953	0.85[ASN][1000 genomes]
rs1421356	0.85[ASN][1000 genomes]
rs1833456	0.85[ASN][1000 genomes]
rs2040644	0.85[ASN][1000 genomes]
rs2040645	0.85[ASN][1000 genomes]
rs2040646	0.85[ASN][1000 genomes]
rs2040647	0.85[ASN][1000 genomes]
rs2079026	0.90[ASN][1000 genomes]
rs2079027	0.85[ASN][1000 genomes]
rs2079028	0.85[ASN][1000 genomes]
rs34187987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34692456	0.85[ASN][1000 genomes]
rs34762197	0.90[ASN][1000 genomes]
rs34878892	0.90[ASN][1000 genomes]
rs35521464	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35743720	0.90[ASN][1000 genomes]
rs35839210	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35889007	0.81[ASN][1000 genomes]
rs36059508	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4473016	0.90[ASN][1000 genomes]
rs4768145	0.90[ASN][1000 genomes]
rs4768146	0.90[ASN][1000 genomes]
rs4768147	0.90[ASN][1000 genomes]
rs4768798	0.90[ASN][1000 genomes]
rs4768800	0.90[ASN][1000 genomes]
rs71445736	0.90[ASN][1000 genomes]
rs71462954	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462955	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71462956	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71462957	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71462958	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71462959	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71462960	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71462961	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs855129	0.81[ASN][1000 genomes]
rs855131	0.81[ASN][1000 genomes]
rs855132	0.81[ASN][1000 genomes]
rs855133	0.81[ASN][1000 genomes]
rs855139	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47709200-47727000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:47717800-47722600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:47721800-47723600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr12:47722000-47722800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:47722000-47723600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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