Variant report

Variant	rs855139
Chromosome Location	chr12:47718408-47718409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47717481..47720198-chr12:47722159..47724714,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10492012	0.85[ASN][1000 genomes]
rs11183848	0.89[ASN][1000 genomes]
rs11183850	0.85[ASN][1000 genomes]
rs11183851	0.81[ASN][1000 genomes]
rs11183853	0.81[ASN][1000 genomes]
rs11183854	0.81[ASN][1000 genomes]
rs11183855	0.81[ASN][1000 genomes]
rs11183856	0.81[ASN][1000 genomes]
rs11183857	0.81[ASN][1000 genomes]
rs11183858	0.81[ASN][1000 genomes]
rs11183859	0.81[ASN][1000 genomes]
rs11183860	0.81[ASN][1000 genomes]
rs11183862	0.81[ASN][1000 genomes]
rs11183863	0.81[ASN][1000 genomes]
rs11183866	0.81[ASN][1000 genomes]
rs11183871	0.81[ASN][1000 genomes]
rs11183874	0.85[ASN][1000 genomes]
rs11183875	0.85[ASN][1000 genomes]
rs11183877	0.85[ASN][1000 genomes]
rs11183878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11183879	0.85[ASN][1000 genomes]
rs11183880	0.85[ASN][1000 genomes]
rs11183881	0.85[ASN][1000 genomes]
rs11183882	0.85[ASN][1000 genomes]
rs11183883	0.85[ASN][1000 genomes]
rs11183884	0.85[ASN][1000 genomes]
rs11183885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11183886	0.85[ASN][1000 genomes]
rs11183890	0.85[ASN][1000 genomes]
rs11183892	0.85[ASN][1000 genomes]
rs11183893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11183894	0.85[ASN][1000 genomes]
rs11183895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11183896	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11183897	0.85[ASN][1000 genomes]
rs11183898	0.85[ASN][1000 genomes]
rs11183900	0.85[ASN][1000 genomes]
rs11183901	0.85[ASN][1000 genomes]
rs11183913	0.85[ASN][1000 genomes]
rs11183969	1.00[JPT][hapmap]
rs11561402	0.81[ASN][1000 genomes]
rs12228428	0.81[ASN][1000 genomes]
rs12230585	0.81[ASN][1000 genomes]
rs12809861	0.81[ASN][1000 genomes]
rs12809955	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12810168	0.81[ASN][1000 genomes]
rs12814452	0.85[ASN][1000 genomes]
rs12817826	0.85[ASN][1000 genomes]
rs12818155	0.85[ASN][1000 genomes]
rs12818420	0.85[ASN][1000 genomes]
rs12827137	0.85[ASN][1000 genomes]
rs12830961	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12832278	0.85[ASN][1000 genomes]
rs12832953	0.85[ASN][1000 genomes]
rs1421356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1833456	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2040644	0.85[ASN][1000 genomes]
rs2040645	0.85[ASN][1000 genomes]
rs2040646	0.85[ASN][1000 genomes]
rs2040647	0.85[ASN][1000 genomes]
rs2079026	0.81[ASN][1000 genomes]
rs215340	0.88[CHB][hapmap];1.00[CHD][hapmap]
rs34187987	0.81[ASN][1000 genomes]
rs34692456	0.85[ASN][1000 genomes]
rs34762197	0.81[ASN][1000 genomes]
rs34878892	0.81[ASN][1000 genomes]
rs35743720	0.81[ASN][1000 genomes]
rs35839210	0.81[ASN][1000 genomes]
rs36059508	0.81[ASN][1000 genomes]
rs4473016	0.81[ASN][1000 genomes]
rs4768145	0.81[ASN][1000 genomes]
rs4768146	0.81[ASN][1000 genomes]
rs4768147	0.81[ASN][1000 genomes]
rs4768798	0.81[ASN][1000 genomes]
rs4768800	0.81[ASN][1000 genomes]
rs4768805	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71445736	0.81[ASN][1000 genomes]
rs71462954	0.81[ASN][1000 genomes]
rs855129	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs855133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs855139	C12orf41	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47709200-47727000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:47717800-47722600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:47718200-47718800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links