Variant report

Variant	rs11183872
Chromosome Location	chr12:47732413-47732414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47731508..47734364-chr12:47739828..47742066,2	K562	blood:

Variant related genes	Relation type
ENSG00000199566	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10492012	0.90[ASN][1000 genomes]
rs10881106	1.00[YRI][hapmap]
rs11183848	0.85[ASN][1000 genomes]
rs11183850	0.80[ASN][1000 genomes]
rs11183851	0.95[ASN][1000 genomes]
rs11183853	0.95[ASN][1000 genomes]
rs11183854	0.95[ASN][1000 genomes]
rs11183855	0.95[ASN][1000 genomes]
rs11183856	0.95[ASN][1000 genomes]
rs11183857	0.95[ASN][1000 genomes]
rs11183858	0.95[ASN][1000 genomes]
rs11183859	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183860	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183862	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183863	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183866	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183869	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11183870	0.80[AMR][1000 genomes]
rs11183871	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11183874	0.90[ASN][1000 genomes]
rs11183875	0.90[ASN][1000 genomes]
rs11183877	0.90[ASN][1000 genomes]
rs11183878	0.90[ASN][1000 genomes]
rs11183879	0.90[ASN][1000 genomes]
rs11183880	0.90[ASN][1000 genomes]
rs11183881	0.90[ASN][1000 genomes]
rs11183882	0.90[ASN][1000 genomes]
rs11183883	0.90[ASN][1000 genomes]
rs11183884	0.90[ASN][1000 genomes]
rs11183885	0.90[ASN][1000 genomes]
rs11183886	0.90[ASN][1000 genomes]
rs11183890	0.90[ASN][1000 genomes]
rs11183891	0.81[ASN][1000 genomes]
rs11183892	0.90[ASN][1000 genomes]
rs11183893	0.90[ASN][1000 genomes]
rs11183894	0.90[ASN][1000 genomes]
rs11183895	0.90[ASN][1000 genomes]
rs11183896	0.90[ASN][1000 genomes]
rs11183897	0.90[ASN][1000 genomes]
rs11183898	0.90[ASN][1000 genomes]
rs11183900	0.90[ASN][1000 genomes]
rs11183901	0.90[ASN][1000 genomes]
rs11183913	0.90[ASN][1000 genomes]
rs11561402	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12228428	0.85[ASN][1000 genomes]
rs12230585	0.85[ASN][1000 genomes]
rs12809861	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12809955	0.81[ASN][1000 genomes]
rs12810168	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12814166	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12814452	0.90[ASN][1000 genomes]
rs12817826	0.90[ASN][1000 genomes]
rs12818155	0.90[ASN][1000 genomes]
rs12818420	0.90[ASN][1000 genomes]
rs12827137	0.90[ASN][1000 genomes]
rs12830961	0.90[ASN][1000 genomes]
rs12832278	0.90[ASN][1000 genomes]
rs12832953	0.90[ASN][1000 genomes]
rs1421356	0.90[ASN][1000 genomes]
rs1833456	0.90[ASN][1000 genomes]
rs2040644	0.90[ASN][1000 genomes]
rs2040645	0.90[ASN][1000 genomes]
rs2040646	0.90[ASN][1000 genomes]
rs2040647	0.90[ASN][1000 genomes]
rs2079026	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2079027	0.90[ASN][1000 genomes]
rs2079028	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34187987	0.95[ASN][1000 genomes]
rs34692456	0.90[ASN][1000 genomes]
rs34762197	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34878892	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35521464	0.90[ASN][1000 genomes]
rs35743720	0.95[ASN][1000 genomes]
rs35839210	0.95[ASN][1000 genomes]
rs35889007	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36059508	0.95[ASN][1000 genomes]
rs4473016	1.00[CEU][hapmap];0.95[ASN][1000 genomes]
rs4768145	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4768146	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4768147	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4768796	0.80[AMR][1000 genomes]
rs4768797	0.80[AMR][1000 genomes]
rs4768798	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4768799	0.80[AMR][1000 genomes]
rs4768800	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71445736	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71462954	0.85[ASN][1000 genomes]
rs71462956	0.90[ASN][1000 genomes]
rs71462957	0.90[ASN][1000 genomes]
rs71462959	0.90[ASN][1000 genomes]
rs71462960	0.90[ASN][1000 genomes]
rs71462961	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47732400-47735600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links