Variant report

Variant	rs34604755
Chromosome Location	chr3:105818308-105818309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10513598	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13071125	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13072469	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13094025	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34111495	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34764964	0.94[AMR][1000 genomes]
rs34872399	0.89[AMR][1000 genomes]
rs35109726	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35153039	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35162401	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35300310	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35363100	0.89[AMR][1000 genomes]
rs4093900	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41435944	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4464484	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61133368	0.87[AFR][1000 genomes]
rs6766776	0.87[AFR][1000 genomes]
rs6772450	0.87[AFR][1000 genomes]
rs6772457	0.87[AFR][1000 genomes]
rs6774881	0.87[AFR][1000 genomes]
rs6780908	0.87[AFR][1000 genomes]
rs6786224	0.87[AFR][1000 genomes]
rs6786322	0.87[AFR][1000 genomes]
rs6791531	0.87[AFR][1000 genomes]
rs6799369	0.90[AFR][1000 genomes]
rs6805653	0.87[AFR][1000 genomes]
rs71315916	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71315917	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71315920	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71315921	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73014976	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73021381	0.87[AFR][1000 genomes]
rs73021382	0.83[AFR][1000 genomes]
rs73021391	0.87[AFR][1000 genomes]
rs73021396	0.87[AFR][1000 genomes]
rs73023104	0.87[AFR][1000 genomes]
rs73023108	0.87[AFR][1000 genomes]
rs73023116	0.87[AFR][1000 genomes]
rs73023118	0.87[AFR][1000 genomes]
rs73023119	0.87[AFR][1000 genomes]
rs73023130	0.87[AFR][1000 genomes]
rs73023137	0.83[AFR][1000 genomes]
rs73023146	0.87[AFR][1000 genomes]
rs73023149	0.87[AFR][1000 genomes]
rs73023157	0.87[AFR][1000 genomes]
rs73023175	0.83[AFR][1000 genomes]
rs73023181	0.90[AFR][1000 genomes]
rs73025136	0.90[AFR][1000 genomes]
rs73025196	0.90[AFR][1000 genomes]
rs7616970	0.85[AFR][1000 genomes]
rs7630457	0.83[AFR][1000 genomes]
rs7630644	0.87[AFR][1000 genomes]
rs7634722	0.87[AFR][1000 genomes]
rs7638149	0.87[AFR][1000 genomes]
rs7653833	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999883	chr3:105687634-106007792	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011888	chr3:105718749-106331879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536679	chr3:105718749-106331879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv822215	chr3:105785478-105871481	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105813000-105821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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