Variant report

Variant	rs34633677
Chromosome Location	chr3:110933182-110933183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1303794	0.81[EUR][1000 genomes]
rs13065090	0.91[EUR][1000 genomes]
rs13085579	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2087336	0.83[EUR][1000 genomes]
rs2958069	0.83[EUR][1000 genomes]
rs2971348	0.83[EUR][1000 genomes]
rs2971356	0.83[EUR][1000 genomes]
rs35218644	0.83[EUR][1000 genomes]
rs35327087	0.91[EUR][1000 genomes]
rs35791065	0.91[EUR][1000 genomes]
rs36019095	0.83[EUR][1000 genomes]
rs6767554	0.83[EUR][1000 genomes]
rs71315870	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71315871	0.83[EUR][1000 genomes]
rs71315872	0.83[EUR][1000 genomes]
rs7611652	0.83[EUR][1000 genomes]
rs7622049	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv3945	chr3:110922029-110967244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110894000-110934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:110899200-110935200	Weak transcription	Lung	lung
3	chr3:110915000-110934200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:110917000-110933400	Weak transcription	Placenta	Placenta
5	chr3:110920000-110945800	Weak transcription	HSMMtube	muscle
6	chr3:110922600-110933600	Weak transcription	Aorta	Aorta
7	chr3:110929000-110934000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:110929400-110934200	Weak transcription	NHDF-Ad	bronchial
9	chr3:110930200-110933800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:110930200-110934000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:110930400-110934000	Weak transcription	Osteobl	bone
12	chr3:110930400-110934200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:110930400-110961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:110933000-110934400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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