Variant report

Variant	rs2958069
Chromosome Location	chr3:110964677-110964678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1303794	0.97[EUR][1000 genomes]
rs13065090	0.92[EUR][1000 genomes]
rs13085579	0.89[EUR][1000 genomes]
rs13100130	0.94[EUR][1000 genomes]
rs1387223	0.94[EUR][1000 genomes]
rs1387224	0.94[EUR][1000 genomes]
rs2087336	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675578	0.94[EUR][1000 genomes]
rs2698325	0.94[EUR][1000 genomes]
rs2932066	0.94[EUR][1000 genomes]
rs2932067	0.94[EUR][1000 genomes]
rs2958089	0.94[EUR][1000 genomes]
rs2958090	0.94[EUR][1000 genomes]
rs2971348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2971356	1.00[EUR][1000 genomes]
rs34633677	0.83[EUR][1000 genomes]
rs35218644	1.00[EUR][1000 genomes]
rs35327087	0.92[EUR][1000 genomes]
rs35380390	0.94[EUR][1000 genomes]
rs35791065	0.92[EUR][1000 genomes]
rs36019095	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36126940	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36128965	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61333742	0.94[EUR][1000 genomes]
rs6767554	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315871	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315872	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611652	1.00[EUR][1000 genomes]
rs7622049	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv3945	chr3:110922029-110967244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110961200-110965800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:110962600-110966000	Weak transcription	Dnd41	blood
3	chr3:110963400-110966600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:110963800-110965600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:110964000-110965600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:110964000-110965600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:110964000-110965600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:110964000-110965600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:110964000-110965600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:110964000-110965600	Weak transcription	Osteobl	bone
11	chr3:110964400-110965600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:110964400-110965800	Weak transcription	NHDF-Ad	bronchial
13	chr3:110964600-110964800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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