Variant report

Variant	rs13100130
Chromosome Location	chr3:111002940-111002941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1303794	0.92[EUR][1000 genomes]
rs13065090	0.85[EUR][1000 genomes]
rs13085579	0.82[EUR][1000 genomes]
rs1387223	1.00[EUR][1000 genomes]
rs1387224	1.00[EUR][1000 genomes]
rs2087336	0.94[EUR][1000 genomes]
rs2675578	1.00[EUR][1000 genomes]
rs2698325	1.00[EUR][1000 genomes]
rs2932066	1.00[EUR][1000 genomes]
rs2932067	1.00[EUR][1000 genomes]
rs2958069	0.94[EUR][1000 genomes]
rs2958089	1.00[EUR][1000 genomes]
rs2958090	1.00[EUR][1000 genomes]
rs2971348	0.94[EUR][1000 genomes]
rs2971356	0.94[EUR][1000 genomes]
rs35218644	0.94[EUR][1000 genomes]
rs35327087	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35380390	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35791065	0.85[EUR][1000 genomes]
rs36019095	0.94[EUR][1000 genomes]
rs36126940	0.88[EUR][1000 genomes]
rs36128965	0.88[EUR][1000 genomes]
rs61333742	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767554	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71315871	0.94[EUR][1000 genomes]
rs71315872	0.94[EUR][1000 genomes]
rs7611652	0.94[EUR][1000 genomes]
rs7622049	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110996400-111003400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:110997000-111003800	Weak transcription	Thymus	Thymus
3	chr3:110997400-111003000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:110997800-111003400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:110998600-111004200	Weak transcription	HSMMtube	muscle
6	chr3:111000400-111003400	Enhancers	Dnd41	blood
7	chr3:111001000-111003000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:111002800-111005400	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links