Variant report

Variant	rs71315871
Chromosome Location	chr3:110954797-110954798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1303794	0.97[EUR][1000 genomes]
rs13065090	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13085579	0.89[EUR][1000 genomes]
rs13100130	0.94[EUR][1000 genomes]
rs1387223	0.94[EUR][1000 genomes]
rs1387224	0.94[EUR][1000 genomes]
rs2087336	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2675578	0.94[EUR][1000 genomes]
rs2698325	0.94[EUR][1000 genomes]
rs2932066	0.94[EUR][1000 genomes]
rs2932067	0.94[EUR][1000 genomes]
rs2958069	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958089	0.94[EUR][1000 genomes]
rs2958090	0.94[EUR][1000 genomes]
rs2971348	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2971356	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34633677	0.83[EUR][1000 genomes]
rs35218644	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35327087	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35380390	0.94[EUR][1000 genomes]
rs35791065	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36019095	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36126940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36128965	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61333742	0.94[EUR][1000 genomes]
rs6767554	1.00[EUR][1000 genomes]
rs71315872	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611652	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7622049	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv3945	chr3:110922029-110967244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110930400-110961000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:110946200-110955400	Weak transcription	NHDF-Ad	bronchial
3	chr3:110953000-110956400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links