Variant report

Variant	rs35380390
Chromosome Location	chr3:110996959-110996960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1303794	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13065090	0.85[EUR][1000 genomes]
rs13085579	0.82[EUR][1000 genomes]
rs13100130	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1387223	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1387224	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2087336	0.94[EUR][1000 genomes]
rs2675578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2698325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2932066	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2932067	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958069	0.94[EUR][1000 genomes]
rs2958089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2958090	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2971348	0.94[EUR][1000 genomes]
rs2971356	0.94[EUR][1000 genomes]
rs35218644	0.94[EUR][1000 genomes]
rs35327087	0.85[EUR][1000 genomes]
rs35791065	0.85[EUR][1000 genomes]
rs36019095	0.94[EUR][1000 genomes]
rs36126940	0.88[EUR][1000 genomes]
rs36128965	0.88[EUR][1000 genomes]
rs61333742	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6767554	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71315871	0.94[EUR][1000 genomes]
rs71315872	0.94[EUR][1000 genomes]
rs7611652	0.94[EUR][1000 genomes]
rs7622049	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110995000-110997000	Enhancers	Fetal Thymus	thymus
2	chr3:110995000-110997200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:110995000-110997800	Enhancers	Dnd41	blood
4	chr3:110995400-110997000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:110995600-110997400	Enhancers	Primary T cells from cord blood	blood
6	chr3:110995800-110997000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:110995800-110997000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:110996200-110997000	Enhancers	Thymus	Thymus
9	chr3:110996400-111003400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:110996800-110997600	Weak transcription	HSMMtube	muscle
11	chr3:110996800-111001200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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