Variant report

Variant	rs34649411
Chromosome Location	chr11:101578217-101578218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11224952	0.93[EUR][1000 genomes]
rs11224955	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11224956	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11224958	0.93[EUR][1000 genomes]
rs11224961	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224963	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11224964	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11224965	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224967	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11224972	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11224973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11224987	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12360583	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12361519	1.00[AFR][1000 genomes]
rs12364156	0.83[EUR][1000 genomes]
rs12365626	1.00[AFR][1000 genomes]
rs12795273	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12802694	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34209047	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34377172	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34813443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35456437	0.87[EUR][1000 genomes]
rs35627477	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35794536	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4379797	0.83[EUR][1000 genomes]
rs67807450	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72982363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998379	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv461	chr11:101534107-101584004	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv74	chr11:101560540-101608664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101564800-101578400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:101575200-101578800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:101576200-101578400	Weak transcription	Esophagus	oesophagus
4	chr11:101576200-101578600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:101577000-101578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:101577000-101579600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:101577400-101578400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:101577800-101578400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:101578200-101578400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:101578200-101578600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:101578200-101578600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:101578200-101578600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:101578200-101578800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links