Variant report

Variant	rs998379
Chromosome Location	chr11:101587510-101587511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10895147	0.82[JPT][hapmap]
rs11224952	0.85[CEU][hapmap]
rs11224956	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs11224972	1.00[AFR][1000 genomes]
rs11224973	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11224975	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11224978	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11224979	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11224987	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12360583	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361519	1.00[AFR][1000 genomes]
rs12365626	1.00[AFR][1000 genomes]
rs12795273	1.00[AFR][1000 genomes]
rs34377172	1.00[AFR][1000 genomes]
rs34649411	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34813443	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs35627477	1.00[AFR][1000 genomes]
rs35794536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824935	0.82[JPT][hapmap]
rs4394815	0.82[JPT][hapmap]
rs67807450	1.00[AFR][1000 genomes]
rs7120953	0.82[JPT][hapmap]
rs7121108	0.82[JPT][hapmap]
rs7126833	0.82[JPT][hapmap]
rs72982363	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv468853	chr11:101539408-101616696	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv556139	chr11:101539408-101616696	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv469987	chr11:101547723-101610380	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv74	chr11:101560540-101608664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv898332	chr11:101562004-101732566	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1044223	chr11:101586478-101626839	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101578600-101588400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:101586200-101588200	Weak transcription	NHEK	skin
3	chr11:101586200-101588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:101586600-101588600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:101586600-101589200	Weak transcription	A549	lung
6	chr11:101587200-101587600	Enhancers	Ovary	ovary
7	chr11:101587400-101587600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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