Variant report

Variant	rs34657839
Chromosome Location	chr3:101085019-101085020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34309330	0.81[EUR][1000 genomes]
rs36018518	0.90[EUR][1000 genomes]
rs6790911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6802335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315238	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1003475	chr3:101005238-101120030	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101030800-101096400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:101038600-101101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:101038800-101089800	Weak transcription	Pancreas	Pancrea
4	chr3:101039800-101106600	Weak transcription	Thymus	Thymus
5	chr3:101040600-101086800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:101040800-101090000	Weak transcription	Brain Angular Gyrus	brain
7	chr3:101042800-101089600	Weak transcription	NH-A	brain
8	chr3:101043200-101105000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:101043800-101096600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:101044400-101103000	Weak transcription	Gastric	stomach
11	chr3:101045800-101110800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:101046400-101089000	Weak transcription	Fetal Brain Male	brain
13	chr3:101047400-101096000	Weak transcription	Psoas Muscle	Psoas
14	chr3:101048600-101088000	Weak transcription	HUVEC	blood vessel
15	chr3:101049200-101096000	Weak transcription	Ovary	ovary
16	chr3:101049200-101102200	Weak transcription	Right Ventricle	heart
17	chr3:101066000-101089800	Weak transcription	Brain Germinal Matrix	brain
18	chr3:101066000-101094000	Weak transcription	Fetal Intestine Large	intestine
19	chr3:101066200-101089000	Weak transcription	Fetal Lung	lung
20	chr3:101066200-101095400	Weak transcription	Fetal Kidney	kidney
21	chr3:101066200-101096000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:101069000-101089800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr3:101073200-101091000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:101074600-101092200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:101075000-101085600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:101076000-101085600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:101076000-101088000	Weak transcription	NHLF	lung
28	chr3:101076200-101102000	Weak transcription	Lung	lung
29	chr3:101076200-101105600	Weak transcription	Esophagus	oesophagus
30	chr3:101076600-101091400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:101076600-101096400	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:101076800-101092800	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:101076800-101093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:101077000-101086800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:101077000-101095800	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:101077000-101096000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:101077000-101102200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:101077200-101089000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:101077800-101085800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr3:101077800-101086600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:101077800-101086800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr3:101077800-101094400	Weak transcription	Fetal Intestine Small	intestine
43	chr3:101077800-101096000	Weak transcription	Small Intestine	intestine
44	chr3:101077800-101101000	Weak transcription	NHDF-Ad	bronchial
45	chr3:101077800-101102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:101078200-101093200	Weak transcription	GM12878-XiMat	blood
47	chr3:101078800-101086000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr3:101079000-101090800	Strong transcription	Primary B cells from cord blood	blood
49	chr3:101079200-101096000	Weak transcription	HSMMtube	muscle
50	chr3:101079600-101094400	Weak transcription	Rectal Mucosa Donor 31	rectum

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