Variant report

Variant	rs6790911
Chromosome Location	chr3:101143560-101143561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34309330	0.81[EUR][1000 genomes]
rs34657839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36018518	0.90[EUR][1000 genomes]
rs6802335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315238	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
2	chr3:101111600-101145800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:101128600-101146200	Weak transcription	Dnd41	blood
4	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:101133600-101160600	Weak transcription	K562	blood
6	chr3:101135000-101144200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:101136800-101144200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:101137200-101143600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:101141000-101185600	Weak transcription	Right Ventricle	heart
10	chr3:101141200-101144200	Weak transcription	Primary B cells from cord blood	blood
11	chr3:101141200-101160000	Weak transcription	Gastric	stomach
12	chr3:101142200-101143600	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr3:101142200-101145000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr3:101142200-101146000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:101142200-101146200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:101142400-101143600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:101142400-101143600	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr3:101142400-101143800	ZNF genes & repeats	Fetal Stomach	stomach
19	chr3:101142400-101144200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr3:101142400-101144400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:101142400-101146000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr3:101142400-101146400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr3:101142600-101143600	ZNF genes & repeats	Fetal Thymus	thymus
24	chr3:101142600-101143800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:101142600-101144600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr3:101143000-101143600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:101143000-101143800	Genic enhancers	Spleen	Spleen
28	chr3:101143200-101143600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:101143200-101143800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr3:101143200-101143800	Genic enhancers	Pancreas	Pancrea
31	chr3:101143200-101145200	Enhancers	Thymus	Thymus
32	chr3:101143200-101146200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr3:101143400-101143600	Enhancers	Left Ventricle	heart
34	chr3:101143400-101143600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr3:101143400-101144600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:101143400-101145000	Enhancers	Primary T cells from cord blood	blood
37	chr3:101143400-101145800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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