Variant report

Variant	rs6802335
Chromosome Location	chr3:101138123-101138124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34309330	0.81[EUR][1000 genomes]
rs34657839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36018518	0.90[EUR][1000 genomes]
rs6790911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71315238	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101107000-101140800	Weak transcription	Esophagus	oesophagus
2	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
3	chr3:101111600-101145800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:101120000-101142400	Weak transcription	Fetal Stomach	stomach
5	chr3:101124200-101140800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:101127400-101143200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:101128000-101138400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:101128600-101146200	Weak transcription	Dnd41	blood
9	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:101129600-101140800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:101131200-101139000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:101131200-101142400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:101131600-101142400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:101133200-101140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:101133400-101140800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:101133400-101140800	Weak transcription	Gastric	stomach
17	chr3:101133400-101140800	Weak transcription	Left Ventricle	heart
18	chr3:101133400-101142800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:101133400-101143000	Weak transcription	Spleen	Spleen
20	chr3:101133400-101143200	Weak transcription	Pancreas	Pancrea
21	chr3:101133600-101160600	Weak transcription	K562	blood
22	chr3:101133800-101140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:101133800-101140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:101133800-101142600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:101133800-101142600	Weak transcription	Fetal Thymus	thymus
26	chr3:101134000-101138400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:101134000-101139000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:101134600-101142200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:101134600-101142200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr3:101134600-101142400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:101134600-101143200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:101134600-101143400	Weak transcription	Primary T cells from cord blood	blood
33	chr3:101134600-101143400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:101135000-101144200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:101135400-101142600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr3:101136000-101138200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:101136800-101138200	Enhancers	Fetal Lung	lung
38	chr3:101136800-101144200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr3:101137000-101140800	Weak transcription	Primary B cells from cord blood	blood
40	chr3:101137200-101143600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:101137600-101142200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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