Variant report

Variant	rs34660868
Chromosome Location	chr1:151685292-151685293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151684351..151686614-chr1:151735552..151738203,2	K562	blood:
2	chr1:151684278..151687580-chr1:151688035..151691948,5	MCF-7	breast:
3	chr1:151676777..151682969-chr1:151683840..151687385,6	K562	blood:
4	chr1:151677595..151679984-chr1:151683063..151685340,3	K562	blood:
5	chr1:151681469..151683266-chr1:151683994..151686437,2	K562	blood:

Variant related genes	Relation type
ENSG00000143450	Chromatin interaction
ENSG00000240510	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000143436	Chromatin interaction
ENSG00000232937	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12746897	0.86[EUR][1000 genomes]
rs12751044	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1607933	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2280473	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280475	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3828056	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4466658	0.81[ASN][1000 genomes]
rs56130043	0.88[EUR][1000 genomes]
rs58983661	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151666000-151685400	Weak transcription	A549	lung
2	chr1:151667000-151687400	Weak transcription	K562	blood
3	chr1:151667800-151686000	Weak transcription	HMEC	breast
4	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
5	chr1:151674000-151685400	Weak transcription	Gastric	stomach
6	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:151674600-151686000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:151674800-151686200	Weak transcription	Esophagus	oesophagus
9	chr1:151680200-151685400	Weak transcription	Spleen	Spleen
10	chr1:151680200-151687400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:151680800-151686800	Enhancers	Fetal Brain Male	brain
12	chr1:151682000-151686400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:151683400-151687800	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
14	chr1:151683400-151688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:151683600-151686400	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:151683800-151686000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:151683800-151687000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:151684000-151687200	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
19	chr1:151684200-151686000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:151684400-151686000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
21	chr1:151684400-151686400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:151684400-151687200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:151684400-151687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:151684400-151689600	Active TSS	Brain Anterior Caudate	brain
25	chr1:151684600-151685400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr1:151684600-151685400	Enhancers	Colonic Mucosa	Colon
27	chr1:151684800-151685400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:151684800-151686000	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr1:151684800-151686200	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr1:151684800-151686200	Enhancers	Stomach Mucosa	stomach
31	chr1:151684800-151686400	Enhancers	HepG2	liver
32	chr1:151685200-151685400	Weak transcription	Brain Angular Gyrus	brain
33	chr1:151685200-151685400	Enhancers	Fetal Kidney	kidney
34	chr1:151685200-151685600	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr1:151685200-151685600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr1:151685200-151685800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr1:151685200-151686200	Enhancers	Fetal Lung	lung

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