Variant report

Variant	rs3828056
Chromosome Location	chr1:151676184-151676185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151668533..151670449-chr1:151674606..151677478,3	MCF-7	breast:
2	chr1:151430268..151431777-chr1:151675061..151677444,2	MCF-7	breast:
3	chr1:151671136..151674505-chr1:151674889..151678422,3	K562	blood:
4	chr1:151674334..151676569-chr1:151677711..151679757,3	MCF-7	breast:
5	chr1:151671136..151673707-chr1:151674889..151677650,3	K562	blood:
6	chr1:151674905..151676971-chr1:151691184..151693969,2	MCF-7	breast:
7	chr1:151674632..151676262-chr1:151762381..151764969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143442	Chromatin interaction
ENSG00000227045	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000182134	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12746897	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12751044	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12752221	0.80[ASN][1000 genomes]
rs1607933	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280473	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2280475	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34660868	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35388624	0.80[ASN][1000 genomes]
rs35654949	0.80[ASN][1000 genomes]
rs4466658	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56130043	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58983661	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6676545	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6690942	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:151665400-151676400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:151666000-151685400	Weak transcription	A549	lung
6	chr1:151667000-151687400	Weak transcription	K562	blood
7	chr1:151667800-151686000	Weak transcription	HMEC	breast
8	chr1:151669600-151681200	Strong transcription	Fetal Brain Female	brain
9	chr1:151670000-151676800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr1:151670000-151689800	Weak transcription	Pancreas	Pancrea
11	chr1:151671400-151682600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:151672000-151678000	Weak transcription	Stomach Mucosa	stomach
13	chr1:151672200-151680400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:151672400-151684800	Weak transcription	Small Intestine	intestine
15	chr1:151672800-151678400	Weak transcription	Colonic Mucosa	Colon
16	chr1:151673200-151677000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:151673600-151678600	Strong transcription	Brain Germinal Matrix	brain
18	chr1:151673800-151676400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:151673800-151677000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:151673800-151680400	Strong transcription	Fetal Intestine Large	intestine
21	chr1:151673800-151682400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:151673800-151685200	Weak transcription	Fetal Kidney	kidney
23	chr1:151674000-151676400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:151674000-151677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:151674000-151677200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:151674000-151677400	Weak transcription	Osteobl	bone
27	chr1:151674000-151677800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:151674000-151677800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr1:151674000-151678000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr1:151674000-151678600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr1:151674000-151682400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:151674000-151685400	Weak transcription	Gastric	stomach
33	chr1:151674200-151677600	Weak transcription	NHLF	lung
34	chr1:151674200-151677800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr1:151674200-151679800	Weak transcription	Right Ventricle	heart
36	chr1:151674200-151683200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:151674200-151683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:151674200-151687400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr1:151674400-151676200	Enhancers	HepG2	liver
40	chr1:151674400-151677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:151674400-151677600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:151674400-151677800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:151674400-151679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr1:151674600-151676200	Weak transcription	Primary T cells from cord blood	blood
45	chr1:151674600-151676600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:151674600-151676600	Weak transcription	Primary B cells from cord blood	blood
47	chr1:151674600-151676600	Weak transcription	Liver	Liver
48	chr1:151674600-151676800	Weak transcription	Aorta	Aorta
49	chr1:151674600-151676800	Weak transcription	HSMMtube	muscle
50	chr1:151674600-151677400	Weak transcription	Adipose Nuclei	Adipose

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