Variant report

Variant	rs4466658
Chromosome Location	chr1:151673077-151673078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151672629..151675087-chr1:151680419..151682673,2	K562	blood:

Variant related genes	Relation type
ENSG00000159409	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12402668	0.85[AMR][1000 genomes]
rs12733147	0.80[ASN][1000 genomes]
rs12746897	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12751044	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12752221	0.81[ASN][1000 genomes]
rs1607933	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17641780	0.90[JPT][hapmap]
rs2275920	0.88[AMR][1000 genomes]
rs2280473	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280475	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3204344	0.95[JPT][hapmap]
rs34660868	0.81[ASN][1000 genomes]
rs35388624	0.81[ASN][1000 genomes]
rs35654949	0.81[ASN][1000 genomes]
rs3828056	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56130043	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57696433	0.83[AMR][1000 genomes]
rs58983661	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59527020	0.85[AMR][1000 genomes]
rs61501378	0.85[AMR][1000 genomes]
rs6676545	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6685067	0.95[JPT][hapmap]
rs6687866	0.95[JPT][hapmap]
rs6690942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6702842	0.95[JPT][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
4	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
6	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
9	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
13	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:151664400-151674800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr1:151664600-151674200	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr1:151664600-151674600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:151664600-151674600	Strong transcription	Fetal Thymus	thymus
23	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:151664800-151674400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:151664800-151674600	Strong transcription	Adipose Nuclei	Adipose
26	chr1:151664800-151674600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:151664800-151674800	Strong transcription	Spleen	Spleen
28	chr1:151665000-151673200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:151665000-151673800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr1:151665000-151673800	Strong transcription	Brain Cingulate Gyrus	brain
31	chr1:151665000-151674000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:151665000-151674000	Strong transcription	Dnd41	blood
33	chr1:151665000-151674200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr1:151665000-151674400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:151665000-151674600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr1:151665000-151674600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:151665000-151674600	Strong transcription	Liver	Liver
38	chr1:151665000-151674600	Strong transcription	Fetal Lung	lung
39	chr1:151665000-151674600	Strong transcription	Lung	lung
40	chr1:151665000-151674800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:151665000-151674800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:151665000-151674800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:151665000-151674800	Strong transcription	Brain Angular Gyrus	brain
44	chr1:151665000-151674800	Strong transcription	Brain Anterior Caudate	brain
45	chr1:151665000-151674800	Strong transcription	Colon Smooth Muscle	Colon
46	chr1:151665000-151674800	Strong transcription	Placenta	Placenta
47	chr1:151665000-151674800	Strong transcription	Ovary	ovary
48	chr1:151665200-151674600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:151665200-151674600	Strong transcription	Primary B cells from cord blood	blood
50	chr1:151665200-151674600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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