Variant report

Variant	rs61501378
Chromosome Location	chr1:151698793-151698794
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11204878	0.81[EUR][1000 genomes]
rs12402668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275920	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275921	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466658	0.85[AMR][1000 genomes]
rs57696433	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59527020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690942	0.82[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151694600-151699200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:151694600-151700000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:151694800-151700000	Weak transcription	Brain Anterior Caudate	brain
4	chr1:151695000-151700400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:151697000-151701000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:151697200-151700600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:151697200-151700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:151698200-151701000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr1:151698400-151698800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:151698400-151700000	Enhancers	Fetal Intestine Large	intestine
11	chr1:151698400-151700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:151698600-151699600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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