Variant report

Variant	rs59527020
Chromosome Location	chr1:151700523-151700524
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151688007..151690432-chr1:151699562..151701503,2	MCF-7	breast:
2	chr1:151682201..151684872-chr1:151698617..151700644,2	MCF-7	breast:
3	chr1:151693523..151696845-chr1:151699758..151701957,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240510	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000178796	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11204878	0.81[EUR][1000 genomes]
rs12402668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275920	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275921	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466658	0.85[AMR][1000 genomes]
rs57696433	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61501378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690942	0.82[AMR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151697000-151701000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:151697200-151700600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:151697200-151700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:151698200-151701000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr1:151698400-151700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:151699200-151703800	Enhancers	Fetal Brain Male	brain
7	chr1:151699400-151702400	Weak transcription	Colonic Mucosa	Colon
8	chr1:151699600-151700600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:151699800-151701200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:151700000-151700600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr1:151700000-151700600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr1:151700000-151700600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:151700000-151700600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr1:151700000-151701600	Weak transcription	Fetal Intestine Large	intestine
15	chr1:151700000-151702000	Enhancers	Fetal Stomach	stomach
16	chr1:151700200-151700600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:151700200-151700600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
18	chr1:151700200-151700600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:151700200-151700600	Enhancers	Brain Germinal Matrix	brain
20	chr1:151700200-151700600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:151700200-151700600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:151700200-151700600	Flanking Active TSS	Fetal Brain Female	brain
23	chr1:151700200-151700600	Enhancers	Rectal Smooth Muscle	rectum
24	chr1:151700200-151700600	Enhancers	HSMMtube	muscle
25	chr1:151700200-151700800	Enhancers	Colon Smooth Muscle	Colon
26	chr1:151700200-151700800	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr1:151700200-151701200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr1:151700200-151701800	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr1:151700400-151700600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
30	chr1:151700400-151700600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
31	chr1:151700400-151700600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:151700400-151700600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr1:151700400-151700600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:151700400-151700600	Enhancers	Brain Angular Gyrus	brain
35	chr1:151700400-151700600	Enhancers	Brain Cingulate Gyrus	brain
36	chr1:151700400-151700600	Bivalent Enhancer	Osteobl	bone
37	chr1:151700400-151700800	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr1:151700400-151700800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
39	chr1:151700400-151701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr1:151700400-151701600	Enhancers	Fetal Heart	heart
41	chr1:151700400-151701800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr1:151700400-151702800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:151700400-151703000	Enhancers	Pancreatic Islets	Pancreatic Islet

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