Variant report

Variant	rs2275921
Chromosome Location	chr1:151700227-151700228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151688007..151690432-chr1:151699562..151701503,2	MCF-7	breast:
2	chr1:151682201..151684872-chr1:151698617..151700644,2	MCF-7	breast:
3	chr1:151693523..151696845-chr1:151699758..151701957,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159409	Chromatin interaction
ENSG00000178796	Chromatin interaction
ENSG00000240510	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11204878	0.81[EUR][1000 genomes]
rs12402668	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275920	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298294	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57696433	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59527020	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61501378	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151695000-151700400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:151697000-151701000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:151697200-151700600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:151697200-151700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:151698200-151701000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr1:151698400-151700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:151699200-151703800	Enhancers	Fetal Brain Male	brain
8	chr1:151699400-151702400	Weak transcription	Colonic Mucosa	Colon
9	chr1:151699600-151700600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:151699800-151701200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:151700000-151700400	Enhancers	Brain Anterior Caudate	brain
12	chr1:151700000-151700600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr1:151700000-151700600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr1:151700000-151700600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:151700000-151700600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:151700000-151701600	Weak transcription	Fetal Intestine Large	intestine
17	chr1:151700000-151702000	Enhancers	Fetal Stomach	stomach
18	chr1:151700200-151700400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:151700200-151700400	Weak transcription	Brain Angular Gyrus	brain
20	chr1:151700200-151700600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:151700200-151700600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr1:151700200-151700600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:151700200-151700600	Enhancers	Brain Germinal Matrix	brain
24	chr1:151700200-151700600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr1:151700200-151700600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:151700200-151700600	Flanking Active TSS	Fetal Brain Female	brain
27	chr1:151700200-151700600	Enhancers	Rectal Smooth Muscle	rectum
28	chr1:151700200-151700600	Enhancers	HSMMtube	muscle
29	chr1:151700200-151700800	Enhancers	Colon Smooth Muscle	Colon
30	chr1:151700200-151700800	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr1:151700200-151701200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr1:151700200-151701800	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links