Variant report

Variant	rs12402668
Chromosome Location	chr1:151699416-151699417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11204878	0.81[EUR][1000 genomes]
rs2275920	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275921	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466658	0.85[AMR][1000 genomes]
rs57696433	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59527020	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61501378	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690942	0.82[AMR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151694600-151700000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:151694800-151700000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:151695000-151700400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:151697000-151701000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:151697200-151700600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:151697200-151700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:151698200-151701000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:151698400-151700000	Enhancers	Fetal Intestine Large	intestine
9	chr1:151698400-151700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:151698600-151699600	Enhancers	Fetal Intestine Small	intestine
11	chr1:151698800-151700000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:151699000-151700000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
13	chr1:151699200-151699800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr1:151699200-151703800	Enhancers	Fetal Brain Male	brain
15	chr1:151699400-151702400	Weak transcription	Colonic Mucosa	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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