Variant report

Variant	rs34672734
Chromosome Location	chr8:117805281-117805282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117778464..117780161-chr8:117803069..117805763,2	MCF-7	breast:
2	chr8:117804606..117806220-chr8:117812796..117814658,2	K562	blood:
3	chr8:117804720..117807505-chr8:117812796..117815488,2	K562	blood:
4	chr8:117801485..117803736-chr8:117805253..117808179,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147679	Chromatin interaction
ENSG00000147677	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10095889	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10104144	0.82[ASN][1000 genomes]
rs10283122	0.83[ASN][1000 genomes]
rs10283129	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808485	0.82[ASN][1000 genomes]
rs11783824	0.89[ASN][1000 genomes]
rs12548402	0.83[ASN][1000 genomes]
rs12675074	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675093	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13250873	0.90[ASN][1000 genomes]
rs1374299	0.91[ASN][1000 genomes]
rs17664079	0.84[ASN][1000 genomes]
rs1867841	0.92[ASN][1000 genomes]
rs2121339	0.85[ASN][1000 genomes]
rs34701891	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35682273	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145242	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4372028	0.80[ASN][1000 genomes]
rs4464999	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4514005	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4876365	0.91[ASN][1000 genomes]
rs4876679	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876680	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62510194	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6469660	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988190	0.86[ASN][1000 genomes]
rs6990665	0.91[ASN][1000 genomes]
rs6992589	0.87[ASN][1000 genomes]
rs7006087	0.90[ASN][1000 genomes]
rs7013007	0.88[ASN][1000 genomes]
rs7014156	0.91[ASN][1000 genomes]
rs7814084	0.85[ASN][1000 genomes]
rs7817878	0.92[ASN][1000 genomes]
rs7828774	0.91[ASN][1000 genomes]
rs7836226	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117782000-117814000	Weak transcription	Ovary	ovary

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