Variant report

Variant	rs7817878
Chromosome Location	chr8:117801158-117801159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:117800302..117801274-chr8:117854345..117854896,2	MCF-7	breast:
2	chr8:117800316..117801323-chr8:117899498..117900404,4	MCF-7	breast:
3	chr8:117778457..117780615-chr8:117800486..117802167,2	K562	blood:
4	chr8:117800316..117801212-chr8:117852987..117854119,8	MCF-7	breast:
5	chr8:117800325..117801249-chr8:117852174..117853913,9	MCF-7	breast:
6	chr8:117800330..117801289-chr8:117847893..117848821,6	MCF-7	breast:
7	chr8:117800465..117801656-chr8:117899442..117900372,5	K562	blood:
8	chr8:117798017..117801805-chr8:117813902..117817416,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000147677	Chromatin interaction
ENSG00000147679	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10089815	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10094452	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10095889	0.81[ASN][1000 genomes]
rs10104144	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10109369	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10283122	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10283129	0.83[ASN][1000 genomes]
rs10505284	0.82[ASN][1000 genomes]
rs10808485	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11776214	0.81[ASN][1000 genomes]
rs11781754	0.82[ASN][1000 genomes]
rs11783824	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12546186	0.82[ASN][1000 genomes]
rs12548402	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12675074	0.91[ASN][1000 genomes]
rs12675093	0.91[ASN][1000 genomes]
rs13250873	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258789	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13266314	0.81[AMR][1000 genomes]
rs13268448	0.81[ASN][1000 genomes]
rs1374299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17664079	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1867841	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34672734	0.92[ASN][1000 genomes]
rs34701891	0.92[ASN][1000 genomes]
rs35682273	0.90[ASN][1000 genomes]
rs4372028	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4449824	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4464999	0.84[ASN][1000 genomes]
rs4514005	0.83[ASN][1000 genomes]
rs4532623	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4876365	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876671	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4876672	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4876675	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876680	0.83[ASN][1000 genomes]
rs6469660	0.91[ASN][1000 genomes]
rs6981932	0.81[ASN][1000 genomes]
rs6983034	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6988190	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6990665	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6992589	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7006087	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7013007	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014156	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814084	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7823870	0.81[AMR][1000 genomes]
rs7828774	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7836226	0.92[ASN][1000 genomes]
rs7843792	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117780600-117802200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:117782000-117814000	Weak transcription	Ovary	ovary
4	chr8:117784600-117804800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:117785400-117801200	Weak transcription	Left Ventricle	heart
6	chr8:117801000-117801200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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