Variant report

Variant	rs34701891
Chromosome Location	chr8:117800584-117800585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:117800302..117801274-chr8:117854345..117854896,2	MCF-7	breast:
2	chr8:117800316..117801323-chr8:117899498..117900404,4	MCF-7	breast:
3	chr8:117778457..117780615-chr8:117800486..117802167,2	K562	blood:
4	chr8:117800316..117801212-chr8:117852987..117854119,8	MCF-7	breast:
5	chr8:117800285..117800916-chr8:117847856..117848755,3	MCF-7	breast:
6	chr8:117800325..117801249-chr8:117852174..117853913,9	MCF-7	breast:
7	chr8:117800389..117801053-chr8:118056632..118057180,2	K562	blood:
8	chr8:117800330..117801289-chr8:117847893..117848821,6	MCF-7	breast:
9	chr8:117800465..117801656-chr8:117899442..117900372,5	K562	blood:
10	chr8:117798017..117801805-chr8:117813902..117817416,4	MCF-7	breast:
11	chr8:117795253..117798191-chr8:117798844..117800835,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000147679	Chromatin interaction
ENSG00000147677	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10095889	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10104144	0.84[ASN][1000 genomes]
rs10283122	0.85[ASN][1000 genomes]
rs10283129	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10808485	0.84[ASN][1000 genomes]
rs11783824	0.89[ASN][1000 genomes]
rs12548402	0.85[ASN][1000 genomes]
rs12675074	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675093	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13250873	0.90[ASN][1000 genomes]
rs1374299	0.93[ASN][1000 genomes]
rs17664079	0.86[ASN][1000 genomes]
rs1867841	0.92[ASN][1000 genomes]
rs2121339	0.87[ASN][1000 genomes]
rs34672734	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35682273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145242	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4372028	0.82[ASN][1000 genomes]
rs4464999	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4514005	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4876365	0.91[ASN][1000 genomes]
rs4876679	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876680	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62510194	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6469660	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988190	0.87[ASN][1000 genomes]
rs6990665	0.93[ASN][1000 genomes]
rs6992589	0.89[ASN][1000 genomes]
rs7006087	0.90[ASN][1000 genomes]
rs7013007	0.90[ASN][1000 genomes]
rs7014156	0.93[ASN][1000 genomes]
rs7814084	0.87[ASN][1000 genomes]
rs7817878	0.92[ASN][1000 genomes]
rs7828774	0.93[ASN][1000 genomes]
rs7836226	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117780600-117800600	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:117780600-117800600	Weak transcription	Psoas Muscle	Psoas
4	chr8:117780600-117800800	Weak transcription	Brain Angular Gyrus	brain
5	chr8:117780600-117800800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:117780600-117800800	Weak transcription	Brain Substantia Nigra	brain
7	chr8:117780600-117802200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:117782000-117814000	Weak transcription	Ovary	ovary
9	chr8:117784000-117800600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:117784400-117800800	Weak transcription	Fetal Lung	lung
11	chr8:117784600-117804800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:117785400-117800600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:117785400-117800800	Weak transcription	Liver	Liver
14	chr8:117785400-117800800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:117785400-117801200	Weak transcription	Left Ventricle	heart
16	chr8:117786400-117800600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:117786400-117800600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:117786400-117800600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:117786600-117800800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:117786600-117800800	Weak transcription	Primary T cells from cord blood	blood
21	chr8:117786600-117800800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:117788200-117800800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:117793800-117800800	Weak transcription	Fetal Brain Female	brain
24	chr8:117793800-117800800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:117794000-117800800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:117797600-117800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:117800400-117801000	Enhancers	Dnd41	blood
28	chr8:117800400-117801000	Enhancers	HepG2	liver

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