Variant report

Variant	rs34683517
Chromosome Location	chr20:53106524-53106525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:53105569..53106549-chr20:53113990..53114605,2	MCF-7	breast:
2	chr20:53083713..53086465-chr20:53104546..53106950,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11907464	0.82[EUR][1000 genomes]
rs13040866	0.82[EUR][1000 genomes]
rs13042185	0.91[EUR][1000 genomes]
rs13042986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13044898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330017	0.82[EUR][1000 genomes]
rs34310366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34433522	0.98[EUR][1000 genomes]
rs34502501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34616206	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35269605	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35276316	0.97[EUR][1000 genomes]
rs35321528	0.89[EUR][1000 genomes]
rs55745150	0.86[AMR][1000 genomes]
rs56370389	0.86[AMR][1000 genomes]
rs6014032	0.97[EUR][1000 genomes]
rs6023269	0.82[EUR][1000 genomes]
rs6023270	0.82[EUR][1000 genomes]
rs6023272	0.97[EUR][1000 genomes]
rs6023273	0.98[EUR][1000 genomes]
rs6023274	0.97[EUR][1000 genomes]
rs6023275	0.97[EUR][1000 genomes]
rs6023276	0.97[EUR][1000 genomes]
rs6023291	0.91[EUR][1000 genomes]
rs6023307	0.89[EUR][1000 genomes]
rs6023309	0.90[EUR][1000 genomes]
rs6091890	0.81[EUR][1000 genomes]
rs6091891	0.97[EUR][1000 genomes]
rs6098005	0.84[EUR][1000 genomes]
rs6098006	0.97[EUR][1000 genomes]
rs6098007	0.97[EUR][1000 genomes]
rs6098008	0.97[EUR][1000 genomes]
rs6098009	0.97[EUR][1000 genomes]
rs6098011	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66631852	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67687183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73142905	0.86[AMR][1000 genomes]
rs73142922	0.80[AMR][1000 genomes]
rs922398	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53094000-53111600	Weak transcription	Fetal Muscle Leg	muscle
2	chr20:53097400-53115200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr20:53098400-53114000	Weak transcription	Fetal Brain Female	brain
4	chr20:53100600-53110600	Weak transcription	Fetal Brain Male	brain
5	chr20:53102400-53127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:53103600-53118400	Weak transcription	Osteobl	bone
7	chr20:53105600-53108600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr20:53106400-53106600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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