Variant report

Variant	rs55745150
Chromosome Location	chr20:53106240-53106241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13044898	0.86[AMR][1000 genomes]
rs34310366	0.86[AMR][1000 genomes]
rs34502501	0.86[AMR][1000 genomes]
rs34683517	0.86[AMR][1000 genomes]
rs35269605	0.80[AMR][1000 genomes]
rs56370389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67687183	0.86[AMR][1000 genomes]
rs73142905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73142922	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73142924	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73142925	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53093400-53106400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:53094000-53111600	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:53097400-53115200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:53098400-53114000	Weak transcription	Fetal Brain Female	brain
5	chr20:53100600-53110600	Weak transcription	Fetal Brain Male	brain
6	chr20:53102400-53127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:53103600-53118400	Weak transcription	Osteobl	bone
8	chr20:53105600-53108600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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