Variant report

Variant	rs73142922
Chromosome Location	chr20:53115106-53115107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13042986	0.80[AMR][1000 genomes]
rs13044898	0.80[AMR][1000 genomes]
rs34310366	0.80[AMR][1000 genomes]
rs34502501	0.80[AMR][1000 genomes]
rs34683517	0.80[AMR][1000 genomes]
rs35269605	0.86[AMR][1000 genomes]
rs55745150	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56370389	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62214427	1.00[AFR][1000 genomes]
rs66631852	0.80[AMR][1000 genomes]
rs67687183	0.80[AMR][1000 genomes]
rs73142905	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73142924	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73142925	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144072	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53097400-53115200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr20:53102400-53127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:53103600-53118400	Weak transcription	Osteobl	bone
4	chr20:53106600-53115600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr20:53107400-53118400	Weak transcription	NHDF-Ad	bronchial
6	chr20:53108200-53126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:53108200-53127200	Weak transcription	Ovary	ovary
8	chr20:53111200-53132400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr20:53111600-53127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr20:53114600-53115600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:53114600-53116400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:53114800-53115200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr20:53115000-53115400	Enhancers	NHLF	lung
14	chr20:53115000-53115600	Enhancers	Fetal Brain Male	brain
15	chr20:53115000-53116400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:53115000-53130600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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