Variant report

Variant	rs73142924
Chromosome Location	chr20:53116345-53116346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13042986	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35269605	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs55745150	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56370389	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66631852	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73142905	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73142922	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73142925	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53102400-53127200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:53103600-53118400	Weak transcription	Osteobl	bone
3	chr20:53107400-53118400	Weak transcription	NHDF-Ad	bronchial
4	chr20:53108200-53126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr20:53108200-53127200	Weak transcription	Ovary	ovary
6	chr20:53111200-53132400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr20:53111600-53127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr20:53114600-53116400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:53115000-53116400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:53115000-53130600	Weak transcription	Fetal Brain Female	brain
11	chr20:53115600-53116400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr20:53116000-53123000	Weak transcription	NHLF	lung
13	chr20:53116200-53120200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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