Variant report
| Variant | rs34688736 |
|---|---|
| Chromosome Location | chr6:79886183-79886184 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs13200164 | 0.91[EUR][1000 genomes] |
| rs13203405 | 0.91[EUR][1000 genomes] |
| rs13203510 | 0.91[EUR][1000 genomes] |
| rs13209338 | 0.91[EUR][1000 genomes] |
| rs13209772 | 0.91[EUR][1000 genomes] |
| rs13210296 | 0.91[EUR][1000 genomes] |
| rs13210935 | 0.91[EUR][1000 genomes] |
| rs13212378 | 0.91[EUR][1000 genomes] |
| rs13213305 | 0.91[EUR][1000 genomes] |
| rs13217071 | 0.91[EUR][1000 genomes] |
| rs13217706 | 0.91[EUR][1000 genomes] |
| rs13220697 | 0.94[EUR][1000 genomes] |
| rs28360569 | 0.91[EUR][1000 genomes] |
| rs34057607 | 0.94[EUR][1000 genomes] |
| rs34493475 | 0.91[EUR][1000 genomes] |
| rs35099838 | 0.86[EUR][1000 genomes] |
| rs35201024 | 0.91[EUR][1000 genomes] |
| rs35233121 | 0.91[EUR][1000 genomes] |
| rs35237040 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35332837 | 0.91[EUR][1000 genomes] |
| rs35742788 | 0.91[EUR][1000 genomes] |
| rs35838792 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs36116051 | 0.94[EUR][1000 genomes] |
| rs55773960 | 0.94[EUR][1000 genomes] |
| rs66513375 | 0.91[EUR][1000 genomes] |
| rs66633427 | 0.91[EUR][1000 genomes] |
| rs66809524 | 0.91[EUR][1000 genomes] |
| rs66869917 | 0.91[EUR][1000 genomes] |
| rs72893783 | 0.91[EUR][1000 genomes] |
| rs9448670 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830706 | chr6:79825910-79994878 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs34688736 | HMGN3 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79883000-79925000 | Weak transcription | Pancreas | Pancrea |
