Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13200164	0.87[EUR][1000 genomes]
rs13203405	0.87[EUR][1000 genomes]
rs13203510	0.87[EUR][1000 genomes]
rs13209338	0.87[EUR][1000 genomes]
rs13209772	0.87[EUR][1000 genomes]
rs13210296	0.87[EUR][1000 genomes]
rs13210935	0.87[EUR][1000 genomes]
rs13212378	0.87[EUR][1000 genomes]
rs13213305	0.87[EUR][1000 genomes]
rs13217071	0.87[EUR][1000 genomes]
rs13217706	0.87[EUR][1000 genomes]
rs13220697	0.89[EUR][1000 genomes]
rs28360569	0.87[EUR][1000 genomes]
rs34057607	0.89[EUR][1000 genomes]
rs34493475	0.87[EUR][1000 genomes]
rs34688736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35099838	0.82[EUR][1000 genomes]
rs35201024	0.87[EUR][1000 genomes]
rs35233121	0.87[EUR][1000 genomes]
rs35237040	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35332837	0.87[EUR][1000 genomes]
rs35742788	0.87[EUR][1000 genomes]
rs36116051	0.89[EUR][1000 genomes]
rs55773960	0.89[EUR][1000 genomes]
rs66513375	0.87[EUR][1000 genomes]
rs66633427	0.87[EUR][1000 genomes]
rs66809524	0.87[EUR][1000 genomes]
rs66869917	0.87[EUR][1000 genomes]
rs72893783	0.87[EUR][1000 genomes]
rs9448670	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35838792	HMGN3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79883000-79925000	Weak transcription	Pancreas	Pancrea
2	chr6:79890800-79897600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:79890800-79902000	Weak transcription	Esophagus	oesophagus
4	chr6:79892800-79900800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:79893000-79902200	Weak transcription	Left Ventricle	heart
6	chr6:79894200-79895000	Enhancers	Fetal Intestine Large	intestine
7	chr6:79894200-79895000	Enhancers	Fetal Intestine Small	intestine
8	chr6:79894600-79895000	Enhancers	Liver	Liver
9	chr6:79894800-79895000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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