Variant report

Variant	rs36116051
Chromosome Location	chr6:79950029-79950030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79785425..79789135-chr6:79942833..79950296,12	MCF-7	breast:
2	chr6:79943151..79946532-chr6:79946546..79950345,4	MCF-7	breast:
3	chr6:79786599..79788294-chr6:79949135..79951411,2	K562	blood:
4	chr6:79755918..79758564-chr6:79949007..79951329,2	K562	blood:
5	chr6:79927796..79930108-chr6:79949418..79951893,2	K562	blood:

Variant related genes	Relation type
ENSG00000118418	Chromatin interaction
ENSG00000270362	Chromatin interaction
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13200164	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13203405	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13203510	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13209338	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13209772	0.98[EUR][1000 genomes]
rs13210296	0.98[EUR][1000 genomes]
rs13210935	0.98[EUR][1000 genomes]
rs13212378	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13213305	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13217071	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13217706	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13220697	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28360569	0.98[EUR][1000 genomes]
rs34057607	0.96[EUR][1000 genomes]
rs34493475	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34688736	0.94[EUR][1000 genomes]
rs35034704	0.89[AFR][1000 genomes]
rs35099838	0.92[EUR][1000 genomes]
rs35201024	0.98[EUR][1000 genomes]
rs35233121	0.98[EUR][1000 genomes]
rs35237040	0.94[EUR][1000 genomes]
rs35332837	0.98[EUR][1000 genomes]
rs35742788	0.98[EUR][1000 genomes]
rs35838792	0.89[EUR][1000 genomes]
rs55773960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66513375	0.98[EUR][1000 genomes]
rs66633427	0.98[EUR][1000 genomes]
rs66809524	0.98[EUR][1000 genomes]
rs66869917	0.98[EUR][1000 genomes]
rs72893783	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9448670	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79944400-79950400	Weak transcription	Lung	lung
2	chr6:79944800-79950400	Weak transcription	Right Ventricle	heart
3	chr6:79945000-79955400	Weak transcription	Aorta	Aorta
4	chr6:79947800-79950800	Enhancers	Hela-S3	cervix
5	chr6:79949200-79950600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:79949400-79950200	Weak transcription	Esophagus	oesophagus
7	chr6:79949400-79950400	Weak transcription	Left Ventricle	heart
8	chr6:79949400-79950400	Weak transcription	Right Atrium	heart
9	chr6:79949400-79958800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:79949600-79950200	Weak transcription	Stomach Mucosa	stomach
11	chr6:79950000-79950400	Enhancers	GM12878-XiMat	blood

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