Variant report

Variant	rs34698891
Chromosome Location	chr16:13353714-13353715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10127930	0.90[EUR][1000 genomes]
rs10489936	0.83[EUR][1000 genomes]
rs1080307	0.91[EUR][1000 genomes]
rs1217384	0.81[EUR][1000 genomes]
rs12729708	0.82[EUR][1000 genomes]
rs12730735	0.88[EUR][1000 genomes]
rs12731010	0.81[EUR][1000 genomes]
rs12734625	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12735104	0.89[EUR][1000 genomes]
rs12746609	0.92[EUR][1000 genomes]
rs12748727	0.87[EUR][1000 genomes]
rs12752932	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12753075	0.80[EUR][1000 genomes]
rs12753351	0.86[EUR][1000 genomes]
rs12758546	0.92[EUR][1000 genomes]
rs12760457	0.87[EUR][1000 genomes]
rs13374352	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17274550	0.92[EUR][1000 genomes]
rs17274620	0.92[EUR][1000 genomes]
rs17274634	0.92[EUR][1000 genomes]
rs17359302	0.92[EUR][1000 genomes]
rs17462614	0.93[EUR][1000 genomes]
rs17509390	0.89[EUR][1000 genomes]
rs1885454	0.92[EUR][1000 genomes]
rs2040040	0.90[EUR][1000 genomes]
rs2359173	0.92[EUR][1000 genomes]
rs2359174	0.92[EUR][1000 genomes]
rs34042871	0.90[EUR][1000 genomes]
rs34341173	0.90[EUR][1000 genomes]
rs34649199	0.90[EUR][1000 genomes]
rs34857922	0.81[EUR][1000 genomes]
rs34877889	0.86[EUR][1000 genomes]
rs35320278	0.87[EUR][1000 genomes]
rs35383900	0.87[EUR][1000 genomes]
rs35836713	0.87[EUR][1000 genomes]
rs36115604	0.87[EUR][1000 genomes]
rs3747998	0.92[EUR][1000 genomes]
rs3748003	0.92[EUR][1000 genomes]
rs3761931	0.83[EUR][1000 genomes]
rs3789595	0.92[EUR][1000 genomes]
rs3789607	0.89[EUR][1000 genomes]
rs3789609	0.86[EUR][1000 genomes]
rs61817579	0.93[EUR][1000 genomes]
rs61817586	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61817617	0.90[EUR][1000 genomes]
rs61819423	0.80[EUR][1000 genomes]
rs61820162	0.91[EUR][1000 genomes]
rs6668829	0.90[EUR][1000 genomes]
rs6674848	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6703387	0.89[EUR][1000 genomes]
rs7533391	0.81[EUR][1000 genomes]
rs7533605	0.87[EUR][1000 genomes]
rs7549685	0.85[EUR][1000 genomes]
rs7555354	0.87[EUR][1000 genomes]
rs9728096	0.88[AFR][1000 genomes]
rs9803891	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869284	chr16:12735729-13533462	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:13352400-13353800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:13352400-13353800	Strong transcription	Liver	Liver
3	chr16:13353000-13353800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:13353200-13353800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr16:13353600-13353800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell

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