Variant report

Variant	rs7533391
Chromosome Location	chr1:114384259-114384260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114374042..114375545-chr1:114383930..114386687,2	MCF-7	breast:
2	chr1:114382638..114384845-chr1:114488214..114490819,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10127930	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10489936	0.81[EUR][1000 genomes]
rs1080307	0.81[EUR][1000 genomes]
rs1217384	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12729708	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12730735	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12734625	0.83[EUR][1000 genomes]
rs12735104	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12746609	0.82[EUR][1000 genomes]
rs12748727	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12752932	0.83[EUR][1000 genomes]
rs12753351	0.81[EUR][1000 genomes]
rs12758546	0.82[EUR][1000 genomes]
rs12760457	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13374352	0.82[EUR][1000 genomes]
rs17274550	0.82[EUR][1000 genomes]
rs17274620	0.82[EUR][1000 genomes]
rs17274634	0.82[EUR][1000 genomes]
rs17359302	0.82[EUR][1000 genomes]
rs17462614	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17509390	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1885454	0.82[EUR][1000 genomes]
rs2040040	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2359173	0.82[EUR][1000 genomes]
rs2359174	0.82[EUR][1000 genomes]
rs34042871	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34341173	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34649199	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34698891	0.81[EUR][1000 genomes]
rs34857922	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34877889	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35320278	0.82[EUR][1000 genomes]
rs35383900	0.81[EUR][1000 genomes]
rs35836713	0.82[EUR][1000 genomes]
rs36115604	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3747998	0.82[EUR][1000 genomes]
rs3748003	0.82[EUR][1000 genomes]
rs3761931	0.81[EUR][1000 genomes]
rs3789595	0.82[EUR][1000 genomes]
rs3789607	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3789609	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61817579	0.83[EUR][1000 genomes]
rs61817586	0.84[EUR][1000 genomes]
rs61817617	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61820162	0.81[EUR][1000 genomes]
rs6668829	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6674848	0.83[EUR][1000 genomes]
rs6703387	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7533605	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7549685	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7555354	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1826178	chr1:114331645-114471583	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	esv1842398	chr1:114331645-114471583	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	esv1848035	chr1:114331645-114471583	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114355000-114401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:114355000-114401000	Weak transcription	Spleen	Spleen
3	chr1:114355800-114397400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:114355800-114413000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:114357000-114392200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:114361800-114390400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:114377600-114388400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:114377600-114388800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:114377600-114389200	Weak transcription	Dnd41	blood
10	chr1:114377600-114392800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:114377600-114392800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:114378000-114402600	Weak transcription	Colonic Mucosa	Colon
13	chr1:114378800-114385800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:114379000-114386400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr1:114379000-114393000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:114379200-114390400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr1:114379200-114391600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:114379800-114391400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:114380400-114384600	Weak transcription	GM12878-XiMat	blood
20	chr1:114381000-114384400	Weak transcription	Thymus	Thymus
21	chr1:114381000-114384600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:114381000-114385800	Weak transcription	Primary B cells from cord blood	blood
23	chr1:114381000-114390000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr1:114381200-114384600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:114381200-114386000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr1:114381200-114389000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:114381600-114388200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:114382200-114390200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr1:114382600-114392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr1:114382800-114389200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:114383200-114386800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr1:114383200-114387200	Strong transcription	Primary T cells from cord blood	blood
33	chr1:114383400-114386000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr1:114384000-114386800	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links