Variant report

Variant	rs34702848
Chromosome Location	chr8:20987947-20987948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1015379	0.83[AMR][1000 genomes]
rs13252980	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13261360	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13276572	0.83[AMR][1000 genomes]
rs13281706	0.83[AMR][1000 genomes]
rs1460975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1460979	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1554459	0.83[AMR][1000 genomes]
rs17093549	0.83[AMR][1000 genomes]
rs17093555	0.83[AMR][1000 genomes]
rs17423926	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17495702	1.00[AMR][1000 genomes]
rs17495757	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17495792	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17495841	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17495898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1841509	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34074802	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34226603	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34757817	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34883006	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34969903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35057769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35325460	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35417410	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35549782	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35627243	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35698958	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35703133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35741465	0.83[AMR][1000 genomes]
rs35816769	0.83[AMR][1000 genomes]
rs35853955	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35888205	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35899724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36082431	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36096496	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36117371	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4582551	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66823428	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67413955	0.83[AMR][1000 genomes]
rs67922235	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71512802	0.83[AMR][1000 genomes]
rs71513804	0.83[AMR][1000 genomes]
rs71513806	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71513807	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71513808	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71513809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71513810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71513815	0.83[AMR][1000 genomes]
rs73623456	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20982000-20989600	Enhancers	Fetal Heart	heart
2	chr8:20986000-20988400	Enhancers	Right Ventricle	heart
3	chr8:20986400-20988200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:20986400-20988400	Enhancers	Aorta	Aorta
5	chr8:20986400-20988600	Enhancers	Fetal Thymus	thymus
6	chr8:20986400-20989000	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:20986400-20989000	Enhancers	Left Ventricle	heart
8	chr8:20986400-20989600	Enhancers	Fetal Muscle Leg	muscle
9	chr8:20986600-20988000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:20986800-20988400	Enhancers	Primary T cells from cord blood	blood
11	chr8:20986800-20989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:20986800-20989200	Enhancers	Colon Smooth Muscle	Colon
13	chr8:20987000-20988000	Enhancers	Pancreas	Pancrea
14	chr8:20987000-20988200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr8:20987000-20988400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr8:20987000-20988800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:20987000-20988800	Enhancers	Fetal Muscle Trunk	muscle
18	chr8:20987000-20988800	Enhancers	Psoas Muscle	Psoas
19	chr8:20987000-20989000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:20987000-20989000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:20987000-20989600	Enhancers	Lung	lung
22	chr8:20987200-20988000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr8:20987200-20988200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:20987200-20988200	Enhancers	Right Atrium	heart
25	chr8:20987200-20988400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr8:20987200-20988800	Enhancers	Brain Hippocampus Middle	brain
27	chr8:20987200-20988800	Enhancers	Fetal Stomach	stomach
28	chr8:20987400-20988000	Weak transcription	Gastric	stomach
29	chr8:20987400-20988200	Enhancers	Primary T cells fromperipheralblood	blood
30	chr8:20987600-20988000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr8:20987600-20988000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:20987600-20988800	Enhancers	Brain Germinal Matrix	brain
33	chr8:20987600-20989000	Enhancers	Fetal Lung	lung
34	chr8:20987600-20989000	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:20987800-20988200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:20987800-20988200	Enhancers	Placenta	Placenta
37	chr8:20987800-20988600	Enhancers	Fetal Brain Male	brain
38	chr8:20987800-20989400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links