Variant report

Variant	rs1554459
Chromosome Location	chr8:20917893-20917894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1015379	1.00[AMR][1000 genomes]
rs13249884	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13252980	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13261360	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13274991	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13276572	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13281706	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1460975	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1460979	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17093549	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17093555	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17093564	0.83[EUR][1000 genomes]
rs17423926	0.83[AMR][1000 genomes]
rs17495702	0.83[AMR][1000 genomes]
rs17495792	0.83[AMR][1000 genomes]
rs17495841	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17495898	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1841509	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34074802	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34210663	0.85[AMR][1000 genomes]
rs34224528	0.88[EUR][1000 genomes]
rs34226603	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34265291	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34702848	0.83[AMR][1000 genomes]
rs34757817	0.83[AMR][1000 genomes]
rs34882429	0.86[AFR][1000 genomes]
rs34914411	0.86[AFR][1000 genomes]
rs34969903	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35057769	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35102574	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35106026	0.86[AFR][1000 genomes]
rs35325460	0.83[AMR][1000 genomes]
rs35356390	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35417410	0.86[AFR][1000 genomes]
rs35425497	0.86[AFR][1000 genomes]
rs35627243	0.83[AMR][1000 genomes]
rs35698958	0.83[AMR][1000 genomes]
rs35703133	0.83[AMR][1000 genomes]
rs35741465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35789651	0.86[AFR][1000 genomes]
rs35816769	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35853955	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35899724	0.83[AMR][1000 genomes]
rs36033917	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36082431	0.83[AMR][1000 genomes]
rs36096496	0.86[AFR][1000 genomes]
rs36183284	0.86[AFR][1000 genomes]
rs4582551	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs66823428	0.83[AMR][1000 genomes]
rs67413955	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67922235	0.83[AMR][1000 genomes]
rs71512802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71513804	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71513806	0.83[AMR][1000 genomes]
rs71513807	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71513808	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71513809	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71513810	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71513815	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831258	chr8:20754932-20940380	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1028279	chr8:20843801-20930959	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20914200-20925600	Weak transcription	Aorta	Aorta
2	chr8:20916000-20918400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:20916600-20918000	Weak transcription	Fetal Brain Female	brain
4	chr8:20916800-20918400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr8:20917800-20918200	Weak transcription	Psoas Muscle	Psoas
6	chr8:20917800-20919000	Enhancers	Fetal Brain Male	brain

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