Variant report

Variant	rs35417410
Chromosome Location	chr8:20998323-20998324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1015379	1.00[ASN][1000 genomes]
rs13249884	0.81[AMR][1000 genomes]
rs13252980	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13261360	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274991	0.81[AMR][1000 genomes]
rs1460975	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1460979	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554459	0.86[AFR][1000 genomes]
rs17423926	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17424247	0.83[AFR][1000 genomes]
rs17495702	0.90[AMR][1000 genomes]
rs17495757	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17495792	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17495841	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17495898	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841509	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2126108	1.00[ASN][1000 genomes]
rs34074802	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34226603	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34265291	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34284335	0.83[AFR][1000 genomes]
rs34702848	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34757817	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34882429	1.00[AFR][1000 genomes]
rs34883006	0.88[EUR][1000 genomes]
rs34914411	1.00[AFR][1000 genomes]
rs34969903	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35057769	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102574	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35106026	1.00[AFR][1000 genomes]
rs35325460	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35356390	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35407383	1.00[ASN][1000 genomes]
rs35425497	1.00[AFR][1000 genomes]
rs35484396	0.83[AFR][1000 genomes]
rs35549782	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35627243	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35698958	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35703133	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35741465	0.86[AFR][1000 genomes]
rs35789651	1.00[AFR][1000 genomes]
rs35853955	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35888205	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35899724	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36033917	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs36082431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36096496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36117371	0.96[EUR][1000 genomes]
rs36183284	1.00[AFR][1000 genomes]
rs4582551	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66823428	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67922235	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71512802	0.86[AFR][1000 genomes]
rs71513806	0.90[AMR][1000 genomes]
rs71513807	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71513808	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71513809	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71513810	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71513815	1.00[AFR][1000 genomes]
rs73623456	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv831261	chr8:20996095-21193619	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20996800-21001400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:20997000-20998600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:20997400-20998600	Weak transcription	Placenta	Placenta

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