Variant report

Variant	rs35356390
Chromosome Location	chr8:20954762-20954763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1015379	0.91[AMR][1000 genomes]
rs13249884	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13252980	0.86[AFR][1000 genomes]
rs13261360	0.86[AFR][1000 genomes]
rs13274991	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13276572	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13281706	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1460975	0.86[AFR][1000 genomes]
rs1460979	0.86[AFR][1000 genomes]
rs1554459	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17093549	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17093555	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17093564	0.88[EUR][1000 genomes]
rs17495841	0.86[AFR][1000 genomes]
rs17495898	0.86[AFR][1000 genomes]
rs1841509	0.86[AFR][1000 genomes]
rs34074802	0.86[AFR][1000 genomes]
rs34224528	0.88[EUR][1000 genomes]
rs34226603	0.86[AFR][1000 genomes]
rs34265291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34882429	0.86[AFR][1000 genomes]
rs34914411	0.86[AFR][1000 genomes]
rs34969903	0.86[AFR][1000 genomes]
rs35057769	0.86[AFR][1000 genomes]
rs35102574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35106026	0.86[AFR][1000 genomes]
rs35417410	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs35425497	0.86[AFR][1000 genomes]
rs35741465	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35789651	0.86[AFR][1000 genomes]
rs35816769	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35853955	0.86[AFR][1000 genomes]
rs36033917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36096496	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs36183284	0.86[AFR][1000 genomes]
rs4582551	0.86[AFR][1000 genomes]
rs4961400	1.00[ASN][1000 genomes]
rs67413955	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71512802	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71513804	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71513807	0.86[AFR][1000 genomes]
rs71513808	0.86[AFR][1000 genomes]
rs71513809	0.86[AFR][1000 genomes]
rs71513810	0.86[AFR][1000 genomes]
rs71513815	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3356696	chr8:20953522-20954770	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20949000-20958200	Weak transcription	Psoas Muscle	Psoas
2	chr8:20949800-20956400	Weak transcription	Fetal Brain Male	brain
3	chr8:20952400-20956400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:20953600-20958200	Weak transcription	Adipose Nuclei	Adipose
5	chr8:20953800-20956600	Weak transcription	Lung	lung
6	chr8:20953800-20956800	Weak transcription	Left Ventricle	heart
7	chr8:20954400-20956600	Weak transcription	Brain Germinal Matrix	brain

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