Variant report

Variant	rs35789651
Chromosome Location	chr8:20919113-20919114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13252980	1.00[AFR][1000 genomes]
rs13261360	1.00[AFR][1000 genomes]
rs1460975	1.00[AFR][1000 genomes]
rs1460979	1.00[AFR][1000 genomes]
rs1554459	0.86[AFR][1000 genomes]
rs17424247	0.83[AFR][1000 genomes]
rs17495841	1.00[AFR][1000 genomes]
rs17495898	1.00[AFR][1000 genomes]
rs1841509	1.00[AFR][1000 genomes]
rs34074802	1.00[AFR][1000 genomes]
rs34226603	1.00[AFR][1000 genomes]
rs34265291	0.86[AFR][1000 genomes]
rs34284335	0.83[AFR][1000 genomes]
rs34882429	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34914411	1.00[AFR][1000 genomes]
rs34969903	1.00[AFR][1000 genomes]
rs35057769	1.00[AFR][1000 genomes]
rs35102574	0.86[AFR][1000 genomes]
rs35106026	1.00[AFR][1000 genomes]
rs35356390	0.86[AFR][1000 genomes]
rs35417410	1.00[AFR][1000 genomes]
rs35425497	1.00[AFR][1000 genomes]
rs35484396	0.83[AFR][1000 genomes]
rs35741465	0.86[AFR][1000 genomes]
rs35853955	1.00[AFR][1000 genomes]
rs36033917	0.86[AFR][1000 genomes]
rs36096496	1.00[AFR][1000 genomes]
rs36183284	1.00[AFR][1000 genomes]
rs4582551	1.00[AFR][1000 genomes]
rs71512802	0.86[AFR][1000 genomes]
rs71513807	1.00[AFR][1000 genomes]
rs71513808	1.00[AFR][1000 genomes]
rs71513809	1.00[AFR][1000 genomes]
rs71513810	1.00[AFR][1000 genomes]
rs71513815	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831258	chr8:20754932-20940380	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1028279	chr8:20843801-20930959	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20914200-20925600	Weak transcription	Aorta	Aorta
2	chr8:20918200-20919600	Enhancers	Psoas Muscle	Psoas
3	chr8:20918800-20919200	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links