Variant report

Variant	rs34914411
Chromosome Location	chr8:21026730-21026731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13252980	1.00[AFR][1000 genomes]
rs13261360	1.00[AFR][1000 genomes]
rs1460975	1.00[AFR][1000 genomes]
rs1460979	1.00[AFR][1000 genomes]
rs1554459	0.86[AFR][1000 genomes]
rs17424247	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17495841	1.00[AFR][1000 genomes]
rs17495898	1.00[AFR][1000 genomes]
rs1841509	1.00[AFR][1000 genomes]
rs34074802	1.00[AFR][1000 genomes]
rs34226603	1.00[AFR][1000 genomes]
rs34265291	0.86[AFR][1000 genomes]
rs34284335	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34882429	1.00[AFR][1000 genomes]
rs34969903	1.00[AFR][1000 genomes]
rs35057769	1.00[AFR][1000 genomes]
rs35102574	0.86[AFR][1000 genomes]
rs35106026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35356390	0.86[AFR][1000 genomes]
rs35417410	1.00[AFR][1000 genomes]
rs35425497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35484396	0.83[AFR][1000 genomes]
rs35741465	0.86[AFR][1000 genomes]
rs35789651	1.00[AFR][1000 genomes]
rs35853955	1.00[AFR][1000 genomes]
rs36033917	0.86[AFR][1000 genomes]
rs36096496	1.00[AFR][1000 genomes]
rs36183284	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4582551	1.00[AFR][1000 genomes]
rs71512802	0.86[AFR][1000 genomes]
rs71513807	1.00[AFR][1000 genomes]
rs71513808	1.00[AFR][1000 genomes]
rs71513809	1.00[AFR][1000 genomes]
rs71513810	1.00[AFR][1000 genomes]
rs71513815	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv831261	chr8:20996095-21193619	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv890649	chr8:21001379-21171259	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023459	chr8:21023591-21042178	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:21020000-21027200	Enhancers	Fetal Intestine Small	intestine
2	chr8:21023600-21027000	Weak transcription	Fetal Thymus	thymus
3	chr8:21024000-21026800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:21024000-21026800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:21024000-21026800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:21024000-21027200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:21024600-21028200	Enhancers	Colonic Mucosa	Colon
8	chr8:21025000-21027200	Enhancers	Fetal Intestine Large	intestine
9	chr8:21026000-21027000	Weak transcription	Right Ventricle	heart
10	chr8:21026000-21028600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr8:21026400-21027000	Weak transcription	Spleen	Spleen
12	chr8:21026400-21027200	Enhancers	Fetal Brain Female	brain
13	chr8:21026400-21028600	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr8:21026400-21029800	Enhancers	Fetal Brain Male	brain
15	chr8:21026600-21026800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr8:21026600-21027200	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links