Variant report

Variant	rs35484396
Chromosome Location	chr8:21029459-21029460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13252980	0.83[AFR][1000 genomes]
rs13261360	0.83[AFR][1000 genomes]
rs1460975	0.83[AFR][1000 genomes]
rs1460979	0.83[AFR][1000 genomes]
rs17424247	1.00[AFR][1000 genomes]
rs17495841	0.83[AFR][1000 genomes]
rs17495898	0.83[AFR][1000 genomes]
rs1841509	0.83[AFR][1000 genomes]
rs34074802	0.83[AFR][1000 genomes]
rs34226603	0.83[AFR][1000 genomes]
rs34284335	1.00[AFR][1000 genomes]
rs34882429	0.83[AFR][1000 genomes]
rs34914411	0.83[AFR][1000 genomes]
rs34969903	0.83[AFR][1000 genomes]
rs35057769	0.83[AFR][1000 genomes]
rs35106026	0.83[AFR][1000 genomes]
rs35417410	0.83[AFR][1000 genomes]
rs35425497	0.83[AFR][1000 genomes]
rs35789651	0.83[AFR][1000 genomes]
rs35853955	0.83[AFR][1000 genomes]
rs36096496	0.83[AFR][1000 genomes]
rs36183284	0.83[AFR][1000 genomes]
rs4582551	0.83[AFR][1000 genomes]
rs71513807	0.83[AFR][1000 genomes]
rs71513808	0.83[AFR][1000 genomes]
rs71513809	0.83[AFR][1000 genomes]
rs71513810	0.83[AFR][1000 genomes]
rs71513815	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv831260	chr8:20907266-21097125	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv469878	chr8:20955260-21128307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv482339	chr8:20955260-21128307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv831261	chr8:20996095-21193619	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv890649	chr8:21001379-21171259	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023459	chr8:21023591-21042178	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:21026400-21029800	Enhancers	Fetal Brain Male	brain
2	chr8:21027400-21029600	Weak transcription	Right Ventricle	heart
3	chr8:21027400-21029800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:21027800-21030400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:21027800-21031800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:21028200-21030200	Weak transcription	Colonic Mucosa	Colon
7	chr8:21028200-21031600	Weak transcription	Right Atrium	heart
8	chr8:21028400-21029800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:21028600-21030200	Enhancers	Spleen	Spleen
10	chr8:21028600-21031800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr8:21028800-21031000	Weak transcription	Brain Germinal Matrix	brain
12	chr8:21029200-21032800	Enhancers	GM12878-XiMat	blood
13	chr8:21029400-21029600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:21029400-21030200	Enhancers	Lung	lung
15	chr8:21029400-21030600	Enhancers	Sigmoid Colon	Sigmoid Colon

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