Variant report

Variant	rs34745099
Chromosome Location	chr9:110048212-110048213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110044300..110048942-chr9:110067094..110074281,11	MCF-7	breast:
2	chr9:110045113..110046713-chr9:110046851..110048527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10868	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573662	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573665	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573703	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573709	1.00[ASN][1000 genomes]
rs11573711	0.84[EUR][1000 genomes]
rs11573721	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379885	1.00[ASN][1000 genomes]
rs12379895	1.00[ASN][1000 genomes]
rs13287251	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13298939	0.81[EUR][1000 genomes]
rs1805331	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34593991	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731486	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35218924	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494237	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35626978	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827173	1.00[ASN][1000 genomes]
rs35865856	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35967129	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016101	1.00[ASN][1000 genomes]
rs36089467	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161943	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56377721	0.81[EUR][1000 genomes]
rs66495692	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66539130	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67630898	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495992	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110044400-110048400	Active TSS	Fetal Kidney	kidney
2	chr9:110044400-110048800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:110044600-110048400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:110044600-110048400	Active TSS	GM12878-XiMat	blood
5	chr9:110044600-110049000	Active TSS	Right Ventricle	heart
6	chr9:110044800-110048400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:110044800-110048400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:110044800-110048400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:110044800-110048400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:110044800-110048400	Active TSS	Left Ventricle	heart
11	chr9:110044800-110048400	Active TSS	K562	blood
12	chr9:110044800-110048600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr9:110044800-110048600	Active TSS	Ovary	ovary
14	chr9:110044800-110048800	Active TSS	Psoas Muscle	Psoas
15	chr9:110044800-110048800	Active TSS	HSMMtube	muscle
16	chr9:110045000-110048400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:110045000-110048400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:110045000-110048400	Active TSS	Fetal Muscle Leg	muscle
19	chr9:110045000-110048400	Active TSS	Placenta	Placenta
20	chr9:110045000-110048400	Active TSS	Fetal Stomach	stomach
21	chr9:110045000-110048400	Active TSS	HMEC	breast
22	chr9:110045000-110048400	Active TSS	NHDF-Ad	bronchial
23	chr9:110045000-110048600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr9:110045000-110048600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:110045000-110048600	Active TSS	HSMM	muscle
26	chr9:110045000-110050600	Active TSS	NHLF	lung
27	chr9:110045200-110048400	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr9:110046200-110048600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:110046400-110048400	Active TSS	Right Atrium	heart
30	chr9:110046400-110048800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:110046600-110049000	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr9:110046800-110049000	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr9:110046800-110049000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr9:110046800-110050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:110046800-110050800	Weak transcription	Gastric	stomach
36	chr9:110046800-110050800	Weak transcription	Pancreas	Pancrea
37	chr9:110046800-110051000	Weak transcription	Spleen	Spleen
38	chr9:110047000-110048800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:110047000-110049000	Flanking Active TSS	Dnd41	blood
40	chr9:110047200-110048400	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr9:110047200-110049800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:110047200-110050600	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr9:110047200-110050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr9:110047200-110052400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:110047200-110052600	Enhancers	Primary B cells from peripheral blood	blood
46	chr9:110047200-110054600	Weak transcription	Lung	lung
47	chr9:110047400-110048400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr9:110047400-110048400	Active TSS	Stomach Smooth Muscle	stomach
49	chr9:110047400-110048800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr9:110047400-110048800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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