Variant report

Variant	rs35626978
Chromosome Location	chr9:110099160-110099161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110045522..110047351-chr9:110097744..110099500,2	MCF-7	breast:
2	chr9:108672760..108675101-chr9:110098994..110101048,2	MCF-7	breast:
3	chr9:110044860..110047881-chr9:110095955..110100656,5	MCF-7	breast:
4	chr9:110097867..110099488-chr9:110212610..110214111,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10868	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573607	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573662	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573665	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573703	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573709	1.00[ASN][1000 genomes]
rs11573711	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11573721	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12379885	1.00[ASN][1000 genomes]
rs12379895	1.00[ASN][1000 genomes]
rs13287251	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805331	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34593991	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731486	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34745099	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35218924	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35494237	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827173	1.00[ASN][1000 genomes]
rs35865856	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35967129	1.00[ASN][1000 genomes]
rs36016101	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089467	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161943	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66495692	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66539130	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67630898	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71495992	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
4	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:110088600-110101600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:110089800-110099400	Strong transcription	Placenta	Placenta
8	chr9:110090400-110101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:110091000-110103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:110092000-110101800	Strong transcription	Primary T cells from cord blood	blood
11	chr9:110093000-110103400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:110093200-110101800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:110093200-110103200	Strong transcription	A549	lung
14	chr9:110093200-110103400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:110094600-110101600	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr9:110094800-110100800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:110094800-110101800	Strong transcription	Fetal Intestine Small	intestine
18	chr9:110095000-110104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:110095400-110099600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:110095400-110101600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:110095600-110103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:110096000-110100400	Weak transcription	Fetal Heart	heart
23	chr9:110096000-110103400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:110096200-110103200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:110096200-110103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr9:110096600-110103200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:110096600-110103400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:110096600-110103400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:110096800-110099200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:110096800-110099400	Weak transcription	Lung	lung
31	chr9:110096800-110100600	Weak transcription	Fetal Brain Female	brain
32	chr9:110096800-110101000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:110096800-110102600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr9:110096800-110103400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:110096800-110103400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:110096800-110107200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:110097000-110100000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:110097000-110100400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr9:110097000-110100400	Weak transcription	Ovary	ovary
40	chr9:110097000-110100400	Weak transcription	Thymus	Thymus
41	chr9:110097000-110100600	Weak transcription	Brain Germinal Matrix	brain
42	chr9:110097000-110100600	Weak transcription	GM12878-XiMat	blood
43	chr9:110097000-110100800	Weak transcription	Fetal Lung	lung
44	chr9:110097000-110102600	Weak transcription	Colonic Mucosa	Colon
45	chr9:110097000-110103200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr9:110097000-110103200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:110097000-110103400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr9:110097000-110103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:110097000-110103400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:110097000-110103400	Weak transcription	Gastric	stomach

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