Variant report

Variant	rs35827173
Chromosome Location	chr9:110089718-110089719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110045546..110047714-chr9:110088073..110090913,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10868	1.00[ASN][1000 genomes]
rs11573607	1.00[ASN][1000 genomes]
rs11573662	1.00[ASN][1000 genomes]
rs11573665	1.00[ASN][1000 genomes]
rs11573703	1.00[ASN][1000 genomes]
rs11573709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573721	1.00[ASN][1000 genomes]
rs12379885	1.00[ASN][1000 genomes]
rs12379895	1.00[ASN][1000 genomes]
rs13287251	1.00[ASN][1000 genomes]
rs1805331	1.00[ASN][1000 genomes]
rs34593991	1.00[ASN][1000 genomes]
rs34745099	1.00[ASN][1000 genomes]
rs35218924	1.00[ASN][1000 genomes]
rs35494237	1.00[ASN][1000 genomes]
rs35626978	1.00[ASN][1000 genomes]
rs35865856	1.00[ASN][1000 genomes]
rs35967129	1.00[ASN][1000 genomes]
rs36016101	1.00[ASN][1000 genomes]
rs36089467	1.00[ASN][1000 genomes]
rs56161943	1.00[ASN][1000 genomes]
rs66495692	1.00[ASN][1000 genomes]
rs66539130	1.00[ASN][1000 genomes]
rs67630898	1.00[ASN][1000 genomes]
rs71495992	1.00[ASN][1000 genomes]
rs716004	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
2	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:110065600-110098600	Strong transcription	Dnd41	blood
4	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
7	chr9:110075200-110090600	Weak transcription	Right Ventricle	heart
8	chr9:110075200-110093400	Weak transcription	Esophagus	oesophagus
9	chr9:110077200-110090600	Weak transcription	Brain Germinal Matrix	brain
10	chr9:110077600-110093800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:110079000-110089800	Strong transcription	NH-A	brain
12	chr9:110079400-110097400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:110079600-110095800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:110079600-110098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:110079800-110090600	Weak transcription	Gastric	stomach
16	chr9:110079800-110094600	Weak transcription	Brain Angular Gyrus	brain
17	chr9:110079800-110097600	Strong transcription	HSMM	muscle
18	chr9:110079800-110098000	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:110080000-110096800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:110080200-110097200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:110080600-110097000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:110080600-110097400	Strong transcription	Primary B cells from cord blood	blood
23	chr9:110080600-110097800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:110081000-110090600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:110081200-110090600	Weak transcription	Lung	lung
26	chr9:110081600-110090800	Weak transcription	Psoas Muscle	Psoas
27	chr9:110084000-110096600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:110084000-110097800	Strong transcription	Hela-S3	cervix
29	chr9:110084800-110098800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:110085200-110090600	Weak transcription	Left Ventricle	heart
31	chr9:110085200-110090600	Weak transcription	Spleen	Spleen
32	chr9:110085200-110092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:110085200-110094800	Weak transcription	Aorta	Aorta
34	chr9:110085400-110094600	Weak transcription	Brain Hippocampus Middle	brain
35	chr9:110085400-110097800	Strong transcription	Liver	Liver
36	chr9:110085800-110092000	Weak transcription	NHEK	skin
37	chr9:110086200-110097200	Strong transcription	HepG2	liver
38	chr9:110086200-110097600	Strong transcription	NHLF	lung
39	chr9:110087000-110093200	ZNF genes & repeats	A549	lung
40	chr9:110087200-110090000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:110087200-110093800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr9:110087200-110094600	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:110087200-110098600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr9:110087400-110090400	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:110087400-110090600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:110087400-110090600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:110087400-110090600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:110087400-110090600	Weak transcription	Thymus	Thymus
49	chr9:110087400-110093000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr9:110087400-110094600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links