Variant report

Variant	rs34754155
Chromosome Location	chr3:28723903-28723904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11717111	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11717395	0.88[ASN][1000 genomes]
rs11921695	0.85[ASN][1000 genomes]
rs1350867	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1461822	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1461823	0.87[ASN][1000 genomes]
rs17021644	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17021677	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17021763	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17021787	0.88[ASN][1000 genomes]
rs17021793	0.88[ASN][1000 genomes]
rs2371341	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4298010	0.89[ASN][1000 genomes]
rs4311180	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4482629	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57372256	0.85[ASN][1000 genomes]
rs724188	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73050672	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73052505	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7426401	0.88[ASN][1000 genomes]
rs922288	0.88[ASN][1000 genomes]
rs9310869	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9855864	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9968141	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1015015	chr3:28461972-28728494	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv590010	chr3:28469830-28727214	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1001920	chr3:28711075-28788920	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28722800-28724600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:28723600-28724000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:28723800-28724000	Enhancers	Fetal Lung	lung

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