Variant report

Variant	rs4298010
Chromosome Location	chr3:28749348-28749349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11717111	0.92[ASN][1000 genomes]
rs11717395	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11921695	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1350867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461822	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461823	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17021677	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17021763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17021787	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17021793	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2371341	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34754155	0.89[ASN][1000 genomes]
rs4311180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482629	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57372256	0.91[ASN][1000 genomes]
rs62244460	0.84[ASN][1000 genomes]
rs724188	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73050672	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73052505	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426401	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs922288	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9310869	0.95[ASN][1000 genomes]
rs9855864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968141	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv916364	chr3:28468275-29146280	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1001920	chr3:28711075-28788920	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28746600-28749400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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